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Status
Public on Dec 28, 2016
Title
MDACC Dr. Calin custom ncRNA array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organisms
Homo sapiens ; Mus musculus Manufacturer
Agilent
Manufacture protocol
http://www.genomics.agilent.com/en/Custom-Microarrays/Custom-CGH-CGH-SNP-Microarrays/?cid=AG-PT-123&tabId=AG-PR-1035
Submission date
Dec 27, 2016
Last update date
Dec 28, 2016
Contact name
Simone Anfossi
E-mail(s)
SAnfossi@mdanderson.org Phone
1-713-563-1323
Organization name
UT MD Anderson Cancer Center
Department
Experimental Therapeutics
Street address
1515 Holcombe Blvd
City
Houston
State/province
Texas
ZIP/Postal code
77030
Country
USA
Samples (215)
GSM2440496 , GSM2440497 , GSM2440498 , GSM2440499 , GSM2440500 , GSM2440501
GSM2440502 ,
GSM2440503 ,
GSM2440504 ,
GSM2440505 ,
GSM2440506 ,
GSM2440507 ,
GSM2440508 ,
GSM2440509 ,
GSM2440510 ,
GSM2440511 ,
GSM2440512 ,
GSM2440513 ,
GSM2440514 ,
GSM2440515 ,
GSM2440516 ,
GSM2440517 ,
GSM2440518 ,
GSM2440519 ,
GSM2440520 ,
GSM2440521 ,
GSM2440522 ,
GSM2440523 ,
GSM2440524 ,
GSM2440525 ,
GSM2440526 ,
GSM2440527 ,
GSM2440528 ,
GSM2440529 ,
GSM2440530 ,
GSM2440531 ,
GSM2440532 ,
GSM2440533 ,
GSM2440534 ,
GSM2440535 ,
GSM2440536 ,
GSM2440537 ,
GSM2440538 ,
GSM2440539 ,
GSM2440540 ,
GSM2440541 ,
GSM2440542 ,
GSM2440543 ,
GSM2440544 ,
GSM2440545 ,
GSM2440546 ,
GSM2440547 ,
GSM2440548 ,
GSM2440549 ,
GSM2440550 ,
GSM2440551 ,
GSM2440552 ,
GSM2440553 ,
GSM2440554 ,
GSM2440555 ,
GSM2440556 ,
GSM2440557 ,
GSM2440558 ,
GSM2440559 ,
GSM2440560 ,
GSM2440561 ,
GSM2440562 ,
GSM2440563 ,
GSM2440564 ,
GSM2440565 ,
GSM2440566 ,
GSM2440567 ,
GSM2440568 ,
GSM2440569 ,
GSM2440570 ,
GSM2440571 ,
GSM2440572 ,
GSM2440573 ,
GSM2440574 ,
GSM2440575 ,
GSM2440576 ,
GSM2440577 ,
GSM2440578 ,
GSM2440579 ,
GSM2440580 ,
GSM2440581 ,
GSM2440582 ,
GSM2440583 ,
GSM2440584 ,
GSM2440585 ,
GSM2440586 ,
GSM2440587 ,
GSM2440588 ,
GSM2440589 ,
GSM2440590 ,
GSM2440591 ,
GSM2440592 ,
GSM2440593 ,
GSM2440594 ,
GSM2440595 ,
GSM2440596 ,
GSM2440597 ,
GSM2440598 ,
GSM2440599 ,
GSM2440600 ,
GSM2440601 ,
GSM2440602 ,
GSM2440603 ,
GSM2440604 ,
GSM2440605 ,
GSM2440606 ,
GSM2440607 ,
GSM2440608 ,
GSM2440609 ,
GSM2440610 ,
GSM2440611 ,
GSM2440612 ,
GSM2440613 ,
GSM2440614 ,
GSM2440615 ,
GSM2440616 ,
GSM2440617 ,
GSM2440618 ,
GSM2440619 ,
GSM2440620 ,
GSM2440621 ,
GSM2440622 ,
GSM2440623 ,
GSM2440624 ,
GSM2440625 ,
GSM2440626 ,
GSM2440627 ,
GSM2440628 ,
GSM2440629 ,
GSM2440630 ,
GSM2440631 ,
GSM2440632 ,
GSM2440633 ,
GSM2440634 ,
GSM2440635 ,
GSM2440636 ,
GSM2440637 ,
GSM2440638 ,
GSM2440639 ,
GSM2440640 ,
GSM2440641 ,
GSM2440642 ,
GSM2440643 ,
GSM2440644 ,
GSM2440645 ,
GSM2440646 ,
GSM2440647 ,
GSM2440648 ,
GSM2440649 ,
GSM2440650 ,
GSM2440651 ,
GSM2440652 ,
GSM2440653 ,
GSM2440654 ,
GSM2440655 ,
GSM2440656 ,
GSM2440657 ,
GSM2440658 ,
GSM2440659 ,
GSM2440660 ,
GSM3912592 ,
GSM3912593 ,
GSM3912594 ,
GSM3912595 ,
GSM3912596 ,
GSM3912597 ,
GSM3912598 ,
GSM3912599 ,
GSM3912600 ,
GSM3912601 ,
GSM3912602 ,
GSM3912603 ,
GSM3912604 ,
GSM3912605 ,
GSM3912606 ,
GSM3912607 ,
GSM3912608 ,
GSM3912609 ,
GSM3912610 ,
GSM3912611 ,
GSM3912612 ,
GSM3912613 ,
GSM3912614 ,
GSM3912615 ,
GSM3912616 ,
GSM3912617 ,
GSM3912618 ,
GSM3912619 ,
GSM3912620 ,
GSM3912621 ,
GSM3912622 ,
GSM3912623 ,
GSM3912624 ,
GSM3912625 ,
GSM3912626 ,
GSM3912627 ,
GSM3912628 ,
GSM3912629 ,
GSM3912630 ,
GSM3912631 ,
GSM3912632 ,
GSM3912633 ,
GSM4159275 ,
GSM4159276 ,
GSM4159277 ,
GSM4159278 ,
GSM4159279 ,
GSM4159280 ,
GSM4159281 ,
GSM4159282 Series (5)
GSE92928 ncRNA expression-based, individualized outcome prediction for CRC patients
GSE133588 The non-coding RNome after splenectomy (cohort A)
GSE133589 The non-coding RNome after splenectomy (cohort B)
GSE133590 The lncRNA CCAT2 induces chromosomal instability through the BOP1 – Aurora Kinase B axis in cancers
GSE140324 Head and neck cancer neural reprogramming
Data table header descriptions ID Probe Symbol miRNA_ID SEQUENCE SPOT_ID Symbol ncRNA
Data table ID Probe Symbol miRNA_ID SEQUENCE SPOT_ID Symbol ncRNA (-)3xSLv1
CONTROL
(+)E1A_r60_1
CONTROL
(+)E1A_r60_3
CONTROL
(+)E1A_r60_a104
CONTROL
(+)E1A_r60_a107
CONTROL
(+)E1A_r60_a135
CONTROL
(+)E1A_r60_a20
CONTROL
(+)E1A_r60_a22
CONTROL
(+)E1A_r60_a97
CONTROL
(+)E1A_r60_n11
CONTROL
(+)E1A_r60_n9
CONTROL
CUST_1_PI428283478
1_DLEU2(13q14.3)_0
GAACGGGGGTCTTCCTCCTCCGCCGTTGACAGGTTTTGAC
gi|83816916|ref|NR_002612.1| Homo sapiens deleted in lymphocytic leukemia 2 (non-protein coding) (DLEU2), long non-coding RNA
CUST_1_PI428323633
3PRIME_UC_161_1-200_107
ACAGCATGCTGTCCCACTCCAAATACAATGCTTGGGTTAATGTAAATACCAGTGAAA
uc.161+
CUST_10_PI428283478
11_DQ866763_2500
ATCACACAGGGAACAAACTCAAGGATCTTGACCTTGCCCT
gi|117422538|gb|DQ866763.1| Homo sapiens intronic GAS6 antisense RNA sequence
CUST_10_PI428323633
3PRIME_UC_166_1-200_28
AGTTTATACTGGAAGGTTAATAATTTGTATCTACTGAGGACTTAGAGCTAGCAGGCAA
uc.166+
CUST_100_PI428283478
29_AF279660(13q14.3)_132000
CACCCCATTGGAACCAGCATCAGAAACCTCGATTTAGAGT
gi|13124898|gb|AF279660.2| Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes, complete sequence; and RPL18 and p48/Hip pseudogenes, complete sequence
CUST_100_PI428323633
3PRIME_UC_222_1-200_87
AGTATGTACAAGTCAATTAGCACTGTTCATTAGCAGAATTGGGTATTTGTTTTAAAG
uc.222+
CUST_1000_PI428283478
AF279660(13q14.3)_336500\9226
AGAATTTTTCCACTTCCCCTTGATCCTCAAAGGAGGGCCA
gi|13124898|gb|AF279660.2| Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes, complete sequence; and RPL18 and p48/Hip pseudogenes, complete sequence
CUST_1000_PI428323633
5PRIME_UC_337_1-200_70
CCCACTCGTATTGGAATATGAACGATGACCTTTAAGGAAAGTAGCAACTGTTCTCAA
uc.337+
CUST_10000_PI428323633
hsa_mir_4282_1
hsa-mir-4282 GGTGAAGTTCCAGGGGAAGATTTTAGTATGCCACATTTCTAAAATTTGCATCCAGGA
hsa-mir-4282
48035 5730 Kbytes .Supplementary data files not provided
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