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Sample GSM41875 Query DataSets for GSM41875
Status Public on Feb 10, 2006
Title R80A_1h:Blank_1h - mAdb ID 56657
Sample type RNA
 
Channel 1
Source name Blank_1h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_1h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56657
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 1 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 1
SAMPLE: R80A_1h:Blank_1h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.921 0.528 1 1 1 414 153 102 66 855 278 163 61 0 -0.921
1174364_1 0.038 1.027 1 1 2 2385 1097 102 81 2774 1096 169 97 0 0.038
1175152_1 0.204 1.152 1 1 3 750 306 104 84 822 304 165 108 0 0.204
1175940_1 -0.176 0.885 1 1 4 792 250 108 69 1071 269 166 94 0 -0.176
1176716_1 -0.130 0.914 1 1 5 2482 900 102 75 3228 944 177 92 0 -0.130
1177504_1 0.555 1.469 1 1 6 997 400 108 70 882 304 173 76 0 0.555
1178580_1 0.591 1.506 1 1 7 3229 1656 119 81 2593 1122 174 69 0 0.591
1179356_1 0.781 1 1 8 208 105 106 191 332 166 179 501 -50 -0.357
1180144_1 -0.170 0.889 1 1 9 879 415 102 143 1202 415 178 362 0 -0.170
1180932_1 -0.938 0.522 1 1 10 291 203 107 69 594 220 181 100 0 -0.938
1181708_1 0.265 1.202 1 1 11 463 240 105 61 513 174 164 74 0 0.265
1182496_1 -0.530 0.693 1 1 12 311 185 107 68 516 221 171 66 0 -0.530
1183572_1 0.139 1.101 1 1 13 1324 426 108 81 1471 401 177 210 0 0.139
1184348_1 0.053 1.038 1 1 14 391 181 112 75 491 171 176 199 0 0.053
1185136_1 -1.563 0.338 1 1 15 183 90 118 64 385 193 160 89 0 -1.563
1185924_1 -0.506 0.704 1 1 16 334 125 111 72 547 217 176 65 0 -0.506
1186700_1 0.016 1.011 1 1 17 774 293 111 170 951 248 183 166 0 0.016
1187488_1 -0.636 0.643 1 1 18 393 239 103 59 696 225 168 65 0 -0.636
1188564_1 0.204 1.152 1 1 19 759 345 104 76 838 297 172 96 0 0.204
1189340_1 -0.111 0.926 1 1 20 799 379 106 81 1053 371 176 119 0 -0.111

Total number of rows: 21794

Table truncated, full table size 1514 Kbytes.




Supplementary data files not provided
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