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Sample GSM41878 Query DataSets for GSM41878
Status Public on Feb 10, 2006
Title F72A/R73A_4h:Blank_4h - mAdb ID 56125
Sample type RNA
 
Channel 1
Source name Blank_4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56125
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 4 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 4
SAMPLE: F72A/R73A_4h:Blank_4h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -1.228 0.427 1 1 1 391 142 40 26 875 264 48 17 0 -1.228
1174364_1 -0.308 0.808 1 1 2 6881 2096 43 34 8562 2191 47 18 0 -0.308
1175152_1 -0.540 0.688 1 1 3 1307 355 43 36 1895 517 47 18 0 -0.540
1175940_1 -0.028 0.981 1 1 4 2198 391 43 30 2258 355 48 17 0 -0.028
1176716_1 -0.376 0.771 1 1 5 7887 1390 43 29 10286 1628 50 15 0 -0.376
1177504_1 0.432 1.349 1 1 6 4351 757 46 31 3258 522 49 17 0 0.432
1178580_1 -0.028 0.981 1 1 7 11423 3765 46 28 11716 3465 48 19 0 -0.028
1179356_1 -0.426 0.744 1 1 8 179 93 45 95 231 77 50 276 0 -0.426
1180144_1 0.232 1.174 1 1 9 3456 616 45 34 2971 707 50 25 0 0.232
1180932_1 -1.008 0.497 1 1 10 569 273 44 25 1109 325 47 16 0 -1.008
1181708_1 -0.031 0.979 1 1 11 1308 363 42 33 1347 341 46 17 0 -0.031
1182496_1 -1.437 0.369 1 1 12 296 172 44 28 734 278 48 17 0 -1.437
1183572_1 -0.047 0.968 1 1 13 2712 739 45 28 2819 602 49 17 0 -0.047
1184348_1 -0.090 0.939 1 1 14 426 166 44 28 459 113 50 17 0 -0.090
1185136_1 0.145 1.105 1 1 15 186 97 42 32 184 129 53 21 0 0.145
1185924_1 -0.690 0.620 1 1 16 332 204 43 29 519 144 50 15 0 -0.690
1186700_1 0.105 1.076 1 1 17 2118 653 44 27 1989 476 50 19 0 0.105
1187488_1 -0.597 0.661 1 1 18 786 240 45 30 1178 256 51 18 0 -0.597
1188564_1 0.182 1.135 1 1 19 3609 1098 43 32 3211 677 51 21 0 0.182
1189340_1 -0.389 0.764 1 1 20 1339 616 40 28 1757 860 47 20 0 -0.389

Total number of rows: 21794

Table truncated, full table size 1464 Kbytes.




Supplementary data files not provided
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