NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM41880 Query DataSets for GSM41880
Status Public on Feb 10, 2006
Title F72A/R73A_8h:Blank_8h - mAdb ID 56127
Sample type RNA
 
Channel 1
Source name Blank_8h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_8h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56127
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 8 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 8
SAMPLE: F72A/R73A_8h:Blank_8h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -2.554 0.170 1 1 1 499 213 202 105 1838 549 142 73 0 -2.554
1174364_1 -0.070 0.953 1 1 2 5927 2149 196 101 5997 1708 149 82 0 -0.070
1175152_1 -0.841 0.558 1 1 3 1497 721 191 103 2415 751 141 65 0 -0.841
1175940_1 0.453 1.369 1 1 4 2801 680 195 101 1991 430 140 57 0 0.453
1176716_1 -0.360 0.779 1 1 5 8630 1726 202 110 10658 1746 141 59 0 -0.360
1177504_1 0.393 1.313 1 1 6 5713 1094 192 124 4233 798 145 69 0 0.393
1178580_1 -0.534 0.691 1 1 7 4303 1536 187 135 5943 1639 150 72 0 -0.534
1179356_1 -0.878 0.544 1 1 8 395 205 208 116 489 282 155 62 0 -0.878
1180144_1 -0.087 0.942 1 1 9 3692 915 218 124 3740 784 153 64 0 -0.087
1180932_1 -0.700 0.615 1 1 10 824 431 210 105 1111 627 141 64 0 -0.700
1181708_1 0.121 1.087 1 1 11 1512 583 199 122 1312 434 138 68 0 0.121
1182496_1 -0.272 0.828 1 1 12 552 286 207 129 559 277 154 75 0 -0.272
1183572_1 -0.340 0.790 1 1 13 2072 615 205 117 2447 719 150 92 0 -0.340
1184348_1 -0.277 0.825 1 1 14 660 353 211 115 673 369 144 66 0 -0.277
1185136_1 -0.788 0.579 1 1 15 391 242 204 117 453 177 139 63 0 -0.788
1185924_1 -0.631 0.646 1 1 16 530 264 196 125 645 338 142 77 0 -0.631
1186700_1 -0.281 0.823 1 1 17 2107 658 215 128 2383 557 148 76 0 -0.281
1187488_1 -0.694 0.618 1 1 18 810 359 220 128 1075 385 147 81 0 -0.694
1188564_1 0.220 1.165 1 1 19 3717 1062 217 121 3072 822 151 75 0 0.220
1189340_1 -0.141 0.907 1 1 20 1577 680 215 116 1618 541 158 60 0 -0.141

Total number of rows: 21794

Table truncated, full table size 1532 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap