NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM41889 Query DataSets for GSM41889
Status Public on Feb 10, 2006
Title F72A/R73A_0h:Blank_0h - mAdb ID 51537
Sample type RNA
 
Channel 1
Source name Blank_0h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_0h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51537
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 0 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p19-110403
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: none
treatment_time (hrs): 0
SAMPLE: F72A/R73A_0h:Blank_0h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.571 0.673 1 1 1 1648 588 105 101 2213 673 172 61 0 -0.571
1174364_1 0.103 1.074 1 1 2 17205 4197 102 76 14343 4024 169 58 0 0.103
1175152_1 -0.082 0.945 1 1 3 2104 744 102 85 2049 604 162 56 0 -0.082
1175940_1 -0.183 0.881 1 1 4 2289 717 103 81 2376 628 167 60 0 -0.183
1176716_1 0.040 1.028 1 1 5 12938 3638 108 85 11280 3023 173 56 0 0.040
1177504_1 0.110 1.079 1 1 6 4717 981 102 70 3984 815 176 57 0 0.110
1178580_1 0.131 1.095 1 1 7 7218 2269 104 71 5958 1911 174 56 0 0.131
1179356_1 -0.084 0.944 1 1 8 618 401 105 72 648 239 164 59 0 -0.084
1180144_1 0.029 1.020 1 1 9 7973 2659 110 82 7027 2187 165 53 0 0.029
1180932_1 -0.389 0.764 1 1 10 848 539 107 87 1035 453 171 55 0 -0.389
1181708_1 0.113 1.082 1 1 11 1992 865 104 93 1720 697 166 53 0 0.113
1182496_1 -0.572 0.673 1 1 12 733 401 102 78 997 453 162 65 0 -0.572
1183572_1 0.102 1.073 1 1 13 6107 1566 103 71 5145 1358 163 64 0 0.102
1184348_1 0.229 1.172 1 1 14 1169 598 107 71 976 438 169 58 0 0.229
1185136_1 0.706 1 1 15 130 79 107 88 199 58 170 63 -50 -0.502
1185924_1 -0.575 0.671 1 1 16 839 354 100 122 1148 401 168 61 0 -0.575
1186700_1 0.466 1.381 1 1 17 4252 1460 98 77 2840 897 162 57 0 0.466
1187488_1 -0.112 0.925 1 1 18 1511 646 107 81 1518 512 167 59 0 -0.112
1188564_1 0.001 1.001 1 1 19 9085 2441 104 83 8156 2192 166 55 0 0.001
1189340_1 -0.140 0.907 1 1 20 2764 1126 103 72 2776 864 165 51 0 -0.140

Total number of rows: 21794

Table truncated, full table size 1517 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap