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Sample GSM41904 Query DataSets for GSM41904
Status Public on Feb 10, 2006
Title F72A/R73A_2h:Blank_2h - mAdb ID 54945
Sample type RNA
 
Channel 1
Source name Blank_2h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_2h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54945
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 2 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 2
SAMPLE: F72A/R73A_2h:Blank_2h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.325 0.798 1 1 1 1088 475 90 86 1293 1310 101 36 0 -0.325
1174364_1 0.483 1.398 1 1 2 9017 1652 94 108 6196 1339 109 103 0 0.483
1175152_1 -0.079 0.947 1 1 3 978 415 98 175 993 311 107 273 0 -0.079
1175940_1 -0.142 0.906 1 1 4 689 333 93 94 733 197 106 90 0 -0.142
1176716_1 -0.011 0.992 1 1 5 4892 1315 91 59 4719 901 107 40 0 -0.011
1177504_1 0.350 1.275 1 1 6 667 957 96 65 534 626 107 41 0 0.350
1178580_1 0.318 1.247 1 1 7 6557 1554 102 138 5041 1207 105 131 0 0.318
1179356_1 1.254 2.385 1 1 8 791 2602 103 138 381 207 106 139 0 1.254
1180144_1 -0.053 0.964 1 1 9 1023 365 99 132 1018 244 104 706 0 -0.053
1180932_1 0.598 1.514 1 1 10 997 3990 92 117 675 1566 105 581 0 0.598
1181708_1 0.951 1.933 1 1 11 1415 5397 95 93 754 1004 103 48 0 0.951
1182496_1 0.086 1.061 1 1 12 488 626 95 97 453 217 100 40 0 0.086
1183572_1 0.473 1.388 1 1 13 3495 1175 95 63 2439 902 103 36 0 0.473
1184348_1 -0.284 0.821 1 1 14 423 401 99 136 485 1241 109 44 0 -0.284
1185136_1 -0.291 0.817 1 1 15 269 56 101 61 308 98 112 48 0 -0.291
1185924_1 -0.614 0.653 1 1 16 428 414 99 167 591 284 111 105 0 -0.614
1186700_1 0.395 1.315 1 1 17 1035 1192 101 190 784 348 107 116 0 0.395
1187488_1 -0.564 0.677 1 1 18 519 234 96 59 701 218 105 39 0 -0.564
1188564_1 0.132 1.096 1 1 19 617 424 102 64 556 449 108 47 0 0.132
1189340_1 -0.051 0.965 1 1 20 1931 654 104 64 1912 503 107 49 0 -0.051

Total number of rows: 21794

Table truncated, full table size 1509 Kbytes.




Supplementary data files not provided
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