GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM437436
Query DataSets for GSM437436
Status
Public on Aug 22, 2011
Title
CNS PNET16 Sty1
Sample type
genomic
Source name
Brain Tumour
Organism
Homo sapiens
Characteristics
gender: male
age: 22 months
tumour location: Cerebral
Extracted molecule
genomic DNA
Extraction protocol
Phenol/Chloroform Isoamyl Alcohol and PLG tubes
Label
Biotin
Label protocol
Affymetrix 500K Labelling Protocol
Hybridization protocol
Affymetrix 500K Hybridisation Protocol
Scan protocol
Affymetrix 500K Scanning Protocol
Description
none
Data processing
GCOS
Submission date
Aug 06, 2009
Last update date
Aug 22, 2011
Contact name
Suzanne Miller
Phone
01158230718
Fax
01158230696
URL
http://www.cbtrc.org
Organization name
Children's Brain Tumour Research Centre
Department
Human Development
Lab
D18
Street address
Queen's Medical Centre
City
Nottingham
State/province
Nottinghamshire
ZIP/Postal code
NG72UH
Country
United Kingdom
Platform ID
GPL3720
Series (1)
GSE12370
Genome-wide molecular characterisation of CNS PNET and Pineoblastoma
Data table header descriptions
ID_REF
VALUE
Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1
Relative allele signal for the data in the first probe group
RAS2
Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
Data table
ID_REF
VALUE
CONFIDENCE
RAS1
RAS2
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
AFFX-5Q-123
No Call
1412.5
0
0
0
0
0
0
AFFX-5Q-456
No Call
628
0
0
0
0
0
0
AFFX-5Q-789
No Call
2852.5
0
0
0
0
0
0
AFFX-5Q-ABC
No Call
4086.5
0
0
0
0
0
0
AFFX-barcodeA
No Call
283
0
0
0
0
0
0
AFFX-barcodeB
No Call
452
0
0
0
0
0
0
AFFX-barcodeC
No Call
138.5
0
0
0
0
0
0
AFFX-barcodeD
No Call
166.5
0
0
0
0
0
0
AFFX-barcodeE
No Call
215
0
0
0
0
0
0
AFFX-barcodeF
No Call
164
0
0
0
0
0
0
AFFX-barcodeG
No Call
182.5
0
0
0
0
0
0
AFFX-barcodeH
No Call
298
0
0
0
0
0
0
AFFX-barcodeI
No Call
244.5
0
0
0
0
0
0
AFFX-barcodeJ
No Call
178
0
0
0
0
0
0
AFFX-barcodeK
No Call
174
0
0
0
0
0
0
AFFX-barcodeL
No Call
180.5
0
0
0
0
0
0
AFFX-barcodeM
No Call
151.5
0
0
0
0
0
0
AFFX-barcodeN
No Call
279
0
0
0
0
0
0
AFFX-barcodeO
No Call
175
0
0
0
0
0
0
AFFX-barcodeP
No Call
232.5
0
0
0
0
0
0
Total number of rows:
238378
Table truncated, full table size
18311 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM437436.CEL.gz
28.0 Mb
(ftp)
(http)
CEL
GSM437436.CHP.gz
3.7 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
