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Series GSE12370 Query DataSets for GSE12370
Status Public on Aug 22, 2011
Title Genome-wide molecular characterisation of CNS PNET and Pineoblastoma
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary sPNETs are highly malignant embryonal brain tumours of poor prognosis. The underlying biology is poorly understood. To address this we therefore performed high resolution genetic analysis. 36 CNS PNETs and 8 PBs were analysed using the Affymetrix 100K and 500K Mapping Set to identify copy number imbalance at both the chromosome and gene level.

Keywords: Affymetrix 100K SNP array, Affymetrix 500K SNP arrays
 
Overall design 36 CNS PNETs and 8 PBs with constitutional controls
 
Contributor(s) Miller S, Grundy R
Citation(s) 21798848
Submission date Aug 07, 2008
Last update date Dec 22, 2017
Contact name Suzanne Miller
Phone 01158230718
Fax 01158230696
URL http://www.cbtrc.org
Organization name Children's Brain Tumour Research Centre
Department Human Development
Lab D18
Street address Queen's Medical Centre
City Nottingham
State/province Nottinghamshire
ZIP/Postal code NG72UH
Country United Kingdom
 
Platforms (4)
GPL2004 [Mapping50K_Hind240] Affymetrix Human Mapping 50K Hind240 SNP Array
GPL2005 [Mapping50K_Xba240] Affymetrix Human Mapping 50K Xba240 SNP Array
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
Samples (108)
GSM310506 PB1 HindIII
GSM310507 PB1 Xba1
GSM310508 CNS PNET9 and CNS PNET10 Constitutional HindIII
Relations
BioProject PRJNA113203

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12370_RAW.tar 2.3 Gb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file
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