|
| Status |
Public on Feb 28, 2010 |
| Title |
HYB18 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
OVO8A
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: tumour
treatment: Pre-treatment
patient number: 8
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA isolated using proteinase-K treatment and phenol chloroform purification
|
| Label |
Cy5
|
| Label protocol |
according to manufacturer's protocol
|
| |
|
| Channel 2 |
| Source name |
male pool
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA isolated using proteinase-K treatment and phenol chloroform purification
|
| Label |
Cy3
|
| Label protocol |
according to manufacturer's protocol
|
| |
|
| |
| Hybridization protocol |
according to manufacturer's protocol
|
| Scan protocol |
using Agilent Feature Extraction 8.5 Software
|
| Description |
-
|
| Data processing |
Subtraction background correction and loess normalisation were applied to the data. Scan-date dependent biases were corrected by subtracting systematic noise across all arrays for each scan date
|
| |
|
| Submission date |
Oct 07, 2009 |
| Last update date |
Nov 20, 2009 |
| Contact name |
Charlotte K Y Ng |
| Organization name |
University Hospital Basel
|
| Department |
Pathology
|
| Street address |
Schönbeinstrasse 40
|
| City |
Basel |
| ZIP/Postal code |
4003 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL2879 |
| Series (1) |
| GSE18453 |
DNA copy number data from the CTCR-OV01 study |
|
