GEO help: Mouse over screen elements for information.
Status
Public on Sep 24, 2005
Title
Agilent-013282 Human Genome CGH Microarray 44B (Feature number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4410B
Description
Human Genome CGH Microarray 44B, high-resolution, high performance 60-mer oligonucleotide, allowing genome-wide survey and molecular profiling of DNA copy number changes on a single chip. It provides comprehensive genome-wide coverage with emphasis on the most commonly studied genomic regions and cancer-related genes. It consists of ~43,000 60-mer oligonucleotide probes, empirically validated in multiple model systems, spanning coding and noncoding sequences with average spatial resolution of 35kb. It replaces 44A (G4410A), includes all biological probes from 44A, mapped to the latest NCBI build, 35), plus an additional ~ 2,500 probes to expand coverage in the human genome. Agilent has taken extra measures to design the microarray that truly represents the coverage and performance needed for this application. Agilent has developed and optimized assay protocols that enable researchers to use nanogram levels of total genomic DNA without genome complexity reduction.
Submission date
Sep 23, 2005
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (658)
GSM147666 , GSM147667 , GSM147668 , GSM147669 , GSM157161 , GSM157162
GSM170248 ,
GSM170249 ,
GSM170250 ,
GSM170251 ,
GSM180479 ,
GSM180484 ,
GSM180487 ,
GSM180491 ,
GSM180499 ,
GSM180502 ,
GSM180505 ,
GSM180507 ,
GSM180509 ,
GSM180514 ,
GSM180517 ,
GSM180527 ,
GSM180534 ,
GSM180537 ,
GSM180539 ,
GSM180541 ,
GSM180543 ,
GSM180545 ,
GSM180548 ,
GSM180549 ,
GSM180550 ,
GSM180551 ,
GSM180552 ,
GSM180553 ,
GSM180554 ,
GSM183763 ,
GSM183764 ,
GSM183765 ,
GSM183766 ,
GSM183767 ,
GSM183768 ,
GSM183769 ,
GSM183770 ,
GSM183771 ,
GSM183772 ,
GSM183773 ,
GSM183774 ,
GSM183775 ,
GSM183776 ,
GSM183777 ,
GSM183778 ,
GSM183779 ,
GSM183780 ,
GSM183781 ,
GSM183782 ,
GSM183783 ,
GSM183784 ,
GSM183785 ,
GSM183786 ,
GSM183787 ,
GSM183788 ,
GSM183789 ,
GSM183790 ,
GSM183791 ,
GSM183792 ,
GSM183818 ,
GSM183819 ,
GSM183820 ,
GSM183821 ,
GSM183822 ,
GSM183823 ,
GSM183824 ,
GSM183825 ,
GSM183826 ,
GSM183827 ,
GSM183828 ,
GSM183829 ,
GSM183830 ,
GSM183831 ,
GSM183832 ,
GSM183833 ,
GSM183834 ,
GSM183835 ,
GSM183836 ,
GSM183837 ,
GSM183838 ,
GSM183839 ,
GSM183840 ,
GSM183841 ,
GSM183842 ,
GSM183843 ,
GSM183844 ,
GSM183845 ,
GSM183846 ,
GSM183847 ,
GSM183848 ,
GSM183849 ,
GSM183850 ,
GSM183851 ,
GSM183852 ,
GSM183853 ,
GSM183854 ,
GSM183855 ,
GSM183859 ,
GSM183860 ,
GSM183861 ,
GSM183862 ,
GSM183863 ,
GSM183864 ,
GSM183865 ,
GSM183866 ,
GSM183867 ,
GSM183868 ,
GSM183869 ,
GSM183870 ,
GSM183871 ,
GSM183872 ,
GSM183873 ,
GSM183874 ,
GSM183876 ,
GSM183877 ,
GSM188289 ,
GSM188290 ,
GSM188291 ,
GSM188292 ,
GSM188293 ,
GSM188294 ,
GSM188295 ,
GSM207892 ,
GSM207893 ,
GSM207894 ,
GSM207895 ,
GSM207896 ,
GSM207897 ,
GSM207898 ,
GSM207899 ,
GSM207900 ,
GSM207901 ,
GSM207902 ,
GSM207903 ,
GSM207904 ,
GSM207905 ,
GSM207906 ,
GSM207907 ,
GSM207908 ,
GSM207909 ,
GSM207910 ,
GSM207911 ,
GSM207912 ,
GSM207913 ,
GSM207914 ,
GSM207915 ,
GSM207916 ,
GSM213744 ,
GSM213746 ,
GSM213747 ,
GSM218811 ,
GSM218812 ,
GSM218818 ,
GSM226057 ,
GSM226058 ,
GSM226059 ,
GSM226060 ,
GSM226061 ,
GSM226062 ,
GSM226063 ,
GSM226064 ,
GSM226065 ,
GSM226066 ,
GSM226067 ,
GSM226068 ,
GSM226069 ,
GSM226070 ,
GSM226071 ,
GSM226072 ,
GSM226073 ,
GSM226074 ,
GSM226075 ,
GSM226076 ,
GSM226077 ,
GSM226078 ,
GSM226079 ,
GSM226080 ,
GSM226081 ,
GSM226083 ,
GSM226084 ,
GSM226085 ,
GSM226086 ,
GSM226087 ,
GSM226088 ,
GSM226089 ,
GSM226090 ,
GSM226091 ,
GSM226092 ,
GSM226093 ,
GSM226094 ,
GSM226095 ,
GSM226096 ,
GSM226097 ,
GSM226098 ,
GSM226099 ,
GSM226100 ,
GSM226101 ,
GSM226102 ,
GSM226103 ,
GSM226104 ,
GSM226105 ,
GSM226106 ,
GSM226107 ,
GSM226108 ,
GSM226109 ,
GSM226110 ,
GSM226111 ,
GSM226112 ,
GSM226113 ,
GSM226114 ,
GSM226115 ,
GSM226116 ,
GSM226117 ,
GSM226118 ,
GSM226119 ,
GSM226120 ,
GSM226121 ,
GSM226122 ,
GSM226123 ,
GSM226124 ,
GSM226125 ,
GSM226126 ,
GSM226127 ,
GSM226128 ,
GSM226129 ,
GSM226130 ,
GSM226131 ,
GSM226132 ,
GSM226133 ,
GSM226134 ,
GSM226135 ,
GSM226136 ,
GSM226137 ,
GSM226138 ,
GSM226139 ,
GSM226140 ,
GSM226141 ,
GSM226142 ,
GSM226143 ,
GSM226144 ,
GSM244055 ,
GSM244056 ,
GSM244057 ,
GSM244058 ,
GSM244059 ,
GSM244060 ,
GSM244061 ,
GSM244062 ,
GSM244063 ,
GSM244064 ,
GSM275604 ,
GSM275605 ,
GSM275606 ,
GSM275607 ,
GSM275608 ,
GSM275609 ,
GSM275610 ,
GSM275611 ,
GSM275612 ,
GSM275613 ,
GSM275614 ,
GSM275615 ,
GSM275616 ,
GSM275617 ,
GSM275618 ,
GSM275619 ,
GSM275620 ,
GSM275621 ,
GSM275622 ,
GSM275623 ,
GSM275624 ,
GSM275625 ,
GSM275626 ,
GSM275627 ,
GSM275628 ,
GSM275629 ,
GSM275630 ,
GSM275631 ,
GSM275632 ,
GSM275633 ,
GSM275634 ,
GSM275635 ,
GSM275636 ,
GSM275640 ,
GSM275644 ,
GSM275645 ,
GSM275646 ,
GSM280445 ,
GSM280446 ,
GSM280447 ,
GSM280448 ,
GSM280449 ,
GSM280450 ,
GSM280451 ,
GSM280452 ,
GSM280453 ,
GSM280454 ,
GSM280455 ,
GSM280456 ,
GSM280457 ,
GSM280458 ,
GSM280459 ,
GSM280460 ,
GSM280461 ,
GSM280462 ,
GSM280463 ,
GSM280464 ,
GSM305271 ,
GSM305272 ,
GSM305273 ,
GSM305274 ,
GSM305275 ,
GSM305276 ,
GSM305277 ,
GSM305278 ,
GSM305279 ,
GSM305280 ,
GSM317775 ,
GSM317776 ,
GSM317777 ,
GSM317778 ,
GSM317779 ,
GSM317780 ,
GSM317781 ,
GSM317782 ,
GSM317783 ,
GSM317784 ,
GSM317785 ,
GSM317786 ,
GSM317787 ,
GSM317788 ,
GSM317789 ,
GSM317790 ,
GSM334199 ,
GSM334200 ,
GSM334201 ,
GSM334202 ,
GSM334203 ,
GSM334204 ,
GSM334205 ,
GSM334206 ,
GSM334207 ,
GSM334208 ,
GSM334209 ,
GSM334210 ,
GSM334211 ,
GSM334212 ,
GSM334213 ,
GSM334214 ,
GSM334215 ,
GSM334216 ,
GSM334217 ,
GSM334218 ,
GSM334219 ,
GSM334220 ,
GSM334221 ,
GSM334222 ,
GSM334223 ,
GSM424495 ,
GSM424496 ,
GSM424497 ,
GSM424498 ,
GSM424499 ,
GSM424500 ,
GSM424501 ,
GSM424502 ,
GSM424503 ,
GSM424504 ,
GSM424505 ,
GSM424506 ,
GSM424507 ,
GSM424508 ,
GSM424509 ,
GSM424510 ,
GSM424511 ,
GSM424512 ,
GSM424513 ,
GSM424514 ,
GSM452353 ,
GSM452354 ,
GSM452355 ,
GSM452356 ,
GSM452357 ,
GSM452358 ,
GSM452359 ,
GSM452360 ,
GSM452361 ,
GSM452362 ,
GSM452363 ,
GSM452364 ,
GSM452365 ,
GSM459638 ,
GSM459639 ,
GSM459640 ,
GSM459641 ,
GSM459642 ,
GSM459643 ,
GSM459644 ,
GSM459645 ,
GSM459646 ,
GSM459647 ,
GSM459648 ,
GSM459649 ,
GSM459650 ,
GSM459651 ,
GSM459652 ,
GSM459653 ,
GSM459654 ,
GSM459655 ,
GSM459656 ,
GSM459657 ,
GSM459658 ,
GSM459659 ,
GSM459660 ,
GSM459661 ,
GSM459662 ,
GSM459663 ,
GSM459664 ,
GSM459665 ,
GSM459666 ,
GSM459667 ,
GSM459668 ,
GSM459669 ,
GSM459670 ,
GSM459671 ,
GSM459672 ,
GSM459673 ,
GSM459674 ,
GSM459675 ,
GSM459676 ,
GSM459677 ,
GSM459678 ,
GSM459679 ,
GSM459680 ,
GSM459681 ,
GSM459682 ,
GSM459683 ,
GSM459684 ,
GSM459685 ,
GSM459686 ,
GSM459687 ,
GSM459688 ,
GSM459689 ,
GSM459690 ,
GSM459691 ,
GSM459692 ,
GSM459693 ,
GSM459694 ,
GSM459695 ,
GSM459696 ,
GSM459697 ,
GSM459698 ,
GSM459699 ,
GSM459700 ,
GSM459701 ,
GSM459702 ,
GSM459703 ,
GSM459704 ,
GSM459705 ,
GSM459706 ,
GSM459707 ,
GSM459708 ,
GSM459709 ,
GSM459710 ,
GSM459711 ,
GSM459712 ,
GSM459713 ,
GSM459714 ,
GSM459715 ,
GSM459716 ,
GSM459717 ,
GSM459718 ,
GSM459719 ,
GSM459720 ,
GSM459721 ,
GSM459722 ,
GSM459723 ,
GSM459724 ,
GSM459725 ,
GSM459726 ,
GSM459727 ,
GSM459728 ,
GSM459729 ,
GSM459730 ,
GSM459731 ,
GSM459732 ,
GSM459733 ,
GSM459734 ,
GSM459735 ,
GSM459736 ,
GSM459737 ,
GSM459738 ,
GSM459739 ,
GSM459740 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (37)
GSE6472 The influence of highly recurrent EBV reactivation on genetic copy number alterations
GSE7077 Osteosarcoma microaberrations
GSE7482 ACC Agilent 44K CGH
GSE7599 Human Pancreas tumor vs Normal Human DNA
GSE7602 Human GBM tumor vs Normal Human DNA
GSE7603 Human TALL tumor vs Normal Human DNA
GSE7615 Cancer Process Study
GSE7822 A comparison of DNA copy number profiling platforms using a panel of melanoma cell lines
GSE8398 CGH profiling of 26 Ewing Sarcoma tumour samples
GSE8627 Genomic integrity of P493 cells
GSE8804 Precise Delination of 5q-Breakpoints and Detection of Hidden Aberrations in patients with MDS using Array CGH
GSE8918 CGH profiling of 87 indolent non-hodgkin’s lymphoma (NHL)
GSE9654 Genomic signatures of chromosomal instability and osteosarcoma progression detected by high resolution array CGH and interphase FISH
GSE10878 Integrative Genome-wide Analysis of Glioblastoma.
GSE11109 Characterization of Primary Melanomas Using High-Resolution Array Based CGH Technology
GSE12088 DNA packaging of human spermatozoal chromatin
GSE12659 Chromosomal changes in aggressive breast cancers with basal-like features
GSE13238 DNA packaging of human and murine spermatozoal chromatin
GSE13239 Array Comparative Genomic Hybridization of Merkel Cell Carcinoma Tumors
GSE16930 Genetic Copy Number Variants in Sib Pairs Both Affected with Schizophrenia
GSE18098 Genetic characterization of tumor-stage mycosis fungoides
GSE18453 DNA copy number data from the CTCR-OV01 study
GSE19180 Deletion of the WWOX gene and frequent loss of its protein expression 3 in human osteosarcoma
GSE23891 Gene copy number variation in male breast cancer by aCGH
GSE25771 High-resolution, genome-wide analysis of human metastatic neuroblastoma samples by array-Comparative Genomic Hybridization (aCGH)
GSE28403 Integrative genomic, transcriptomic and RNAi analysis indicates a potential oncogenic role for FAM110B in castration-resistant prostate cancer.
GSE32058 Array-Comparative Genomic Hybridization Reveals Loss of SOCS6 is Associated with Poor Prognosis in Primary Lung Squamous Cell Carcinoma
GSE36282 Low- and High-Grade Mucoepidermoid Carcinomas have different genomic profiles and CRTC1-MAML2 Fusion Gene Status
GSE36823 Clonal competition with alternating dominance in multiple myeloma [44kCGH]
GSE36825 Clonal competition with alternating dominance in multiple myeloma
GSE56109 Chromosome 17/17q gain and unaltered profiles in high resolution array-CGH are prognostically informative in neuroblastoma
GSE145336 19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis (Agilent-013282, dataset 1)
GSE145337 19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis (Agilent-013282, dataset 2)
GSE145341 19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis
GSE153314 SMAD4 haploinsufficiency in small intestinal neuroendocrine tumors
GSE182312 Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia [Array CGH]
GSE182317 Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
Relations Alternative to
GPL11068
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]
Data table ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE 1
103
430
HsCGHBrightCorner
pos
2
103
428
DarkCorner
pos
3
103
426
A_14_P122148
FALSE
NM_014932 NLGN1
neuroligin 1
ref|NM_014932
chr3:175483690-175483749
hs|q26.31
Homo sapiens neuroligin 1 (NLGN1), mRNA.
NC_000003.9[175483690..175483749]
4
103
424
A_14_P113625
FALSE
BC038110 gb|BC038110
chr14:037557242-037557301
hs|q21.1
Homo sapiens chromosome 14 open reading frame 25, mRNA (cDNA clone IMAGE:5268731), partial cds.
NC_000014.7[037557242..037557301]
5
103
422
A_14_P103559
FALSE
NM_000348 SRD5A2
steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)
ref|NM_000348
chr2:031698424-031698483
hs|p23.1
Homo sapiens steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) (SRD5A2), mRNA.
NC_000002.9[031698424..031698483]
6
103
420
A_14_P129762
FALSE
NM_018092 NETO2
neuropilin (NRP) and tolloid (TLL)-like 2
ref|NM_018092
chr16:045682211-045682270
hs|q12.1
Homo sapiens neuropilin (NRP) and tolloid (TLL)-like 2 (NETO2), mRNA.
NC_000016.8[045682211..045682270]
7
103
418
A_14_P120045
FALSE
NM_032888 COL27A1
collagen, type XXVII, alpha 1
ref|NM_032888
chr9:114032695-114032754
hs|q32
Homo sapiens collagen, type XXVII, alpha 1 (COL27A1), mRNA.
NC_000009.9[114032695..114032754]
8
103
416
A_14_P123995
FALSE
NM_173825 RABL3
RAB, member of RAS oncogene family-like 3
ref|NM_173825
chr3:121903263-121903322
hs|q13.33
Homo sapiens RAB, member of RAS oncogene family-like 3 (RABL3), mRNA.
NC_000003.9[121903263..121903322]
9
103
414
A_14_P137812
FALSE
NM_152683 FLJ33167
ref|NM_152683
chr4:185987795-185987854
hs|q35.1
Homo sapiens hypothetical protein FLJ33167 (FLJ33167), mRNA.
NC_000004.9[185987795..185987854]
10
103
412
A_14_P121658
FALSE
NM_001008239 C18orf25
chromosome 18 open reading frame 25
ref|NM_001008239|ref|NM_145055
chr18:042067848-042067907
hs|q21.1
Homo sapiens chromosome 18 open reading frame 25 (C18orf25), transcript variant 2, mRNA.
NC_000018.8[042067848..042067907]
11
103
410
A_14_P200794
FALSE
NM_032229 SLITRK6
SLIT and NTRK-like family, member 6
ref|NM_032229
chr13:085268351-085268410
hs|q31.1
Homo sapiens SLIT and NTRK-like family, member 6 (SLITRK6), mRNA.
NC_000013.9[085268351..085268410]
12
103
408
A_14_P122919
FALSE
NM_018473 THEM2
thioesterase superfamily member 2
ref|NM_018473
chr6:024806112-024806169
hs|p22.2
Homo sapiens thioesterase superfamily member 2 (THEM2), mRNA.
NC_000006.9[024806112..024806169]
13
103
406
A_14_P130374
FALSE
NM_013377 PDZRN4
PDZ domain containing RING finger 4
ref|NM_013377
chr12:040254224-040254283
hs|q12
Homo sapiens PDZ domain containing RING finger 4 (PDZRN4), mRNA.
NC_000012.9[040254224..040254283]
14
103
404
A_14_P200717
FALSE
chrX:036963532-036963591
hs|p21.1
NC_000023.8[036963532..036963591]
15
103
402
A_14_P124952
FALSE
NM_014786 ARHGEF17
Rho guanine nucleotide exchange factor (GEF) 17
ref|NM_014786
chr11:072757694-072757753
hs|q13.4
Homo sapiens Rho guanine nucleotide exchange factor (GEF) 17 (ARHGEF17), mRNA.
NC_000011.8[072757694..072757753]
16
103
400
A_14_P118299
FALSE
NM_145246 C10orf4
chromosome 10 open reading frame 4
ref|NM_145246|ref|NM_203438|ref|NM_203439|ref|NM_203440|ref|NM_203441
chr10:095435016-095435075
hs|q23.33
Homo sapiens chromosome 10 open reading frame 4 (C10orf4), transcript variant FRA10AC1-1, mRNA.
NC_000010.8[095435016..095435075]
17
103
398
A_14_P123605
FALSE
AB037844 gb|AB037844|gb|BC033450
chr6:158933179-158933238
hs|q25.3
Homo sapiens mRNA for KIAA1423 protein, partial cds.
NC_000006.9[158933179..158933238]
18
103
396
A_14_P135559
FALSE
NM_080862 SPSB4
splA/ryanodine receptor domain and SOCS box containing 4
ref|NM_080862
chr3:142350082-142350141
hs|q23
Homo sapiens splA/ryanodine receptor domain and SOCS box containing 4 (SPSB4), mRNA.
NC_000003.9[142350082..142350141]
19
103
394
A_14_P126689
FALSE
NM_133267 GSH2
GS homeobox 2
ref|NM_133267
chr4:054808221-054808271
hs|q12
Homo sapiens GS homeobox 2 (GSH2), mRNA.
NC_000004.9[054808221..054808271]
20
103
392
A_14_P102536
FALSE
NM_016588 NRN1
neuritin 1
ref|NM_016588
chr6:005943381-005943440
hs|p25.1
Homo sapiens neuritin 1 (NRN1), mRNA.
NC_000006.9[005943381..005943440]
44290 9314 Kbytes .Supplementary data files not provided
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