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Sample GSM4997275 Query DataSets for GSM4997275
Status Public on Jan 28, 2021
Title Sample181.Evening bat.202897220140_R01C01
Sample type genomic
 
Source name Muscle
Organism Nycticeius humeralis
Characteristics basename: 202897220140_R01C01
tissue: Muscle
canbeusedforagingstudies: yes
age (years): 0
confidenceinageestimate: 100
Sex: Male
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from tissues
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Muscle species=Evening bat
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Dec 31, 2020
Last update date Jan 28, 2021
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (1)
GSE164127 Genome Methylation Predicts Age and Longevity of Bats

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.482889779
cg00001209 0.912913756
cg00001364 0.856722709
cg00001582 0.480173447
cg00002920 0.502059076
cg00003994 0.099786226
cg00004555 0.165738435
cg00005112 0.74521671
cg00005271 0.936141581
cg00006213 0.805217367
cg00008998 0.440763917
cg00009248 0.695461074
cg00009319 0.510629498
cg00010445 0.826175299
cg00010903 0.970397254
cg00010926 0.780372765
cg00010977 0.905109773
cg00012521 0.848453619
cg00012879 0.706033555
cg00013189 0.037251275

Total number of rows: 37554

Table truncated, full table size 839 Kbytes.




Supplementary file Size Download File type/resource
GSM4997275_202897220140_R01C01_Grn.idat.gz 381.4 Kb (ftp)(http) IDAT
GSM4997275_202897220140_R01C01_Red.idat.gz 382.1 Kb (ftp)(http) IDAT
Processed data included within Sample table

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