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Sample GSM4997352 Query DataSets for GSM4997352
Status Public on Jan 28, 2021
Title Sample258.Pale spear-nosed bat.202894750032_R06C01
Sample type genomic
 
Source name Skin
Organism Phyllostomus discolor
Characteristics basename: 202894750032_R06C01
tissue: Skin
canbeusedforagingstudies: yes
age (years): 11.9
confidenceinageestimate: 100
Sex: Male
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from tissues
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Skin species=Pale spear-nosed bat
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Dec 31, 2020
Last update date Jan 28, 2021
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (1)
GSE164127 Genome Methylation Predicts Age and Longevity of Bats

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.392744063
cg00001209 0.532985313
cg00001364 0.82892356
cg00001582 0.06209879
cg00002920 0.340144615
cg00003994 0.053629091
cg00004555 0.103312967
cg00005112 0.586452741
cg00005271 0.967611134
cg00006213 0.933791339
cg00008998 0.570772039
cg00009248 0.291299401
cg00009319 0.24756048
cg00010445 0.401617754
cg00010903 0.965168195
cg00010926 0.691018783
cg00010977 0.926523916
cg00012521 0.950897163
cg00012879 0.684897431
cg00013189 0.054996738

Total number of rows: 37554

Table truncated, full table size 840 Kbytes.




Supplementary file Size Download File type/resource
GSM4997352_202894750032_R06C01_Grn.idat.gz 382.5 Kb (ftp)(http) IDAT
GSM4997352_202894750032_R06C01_Red.idat.gz 383.5 Kb (ftp)(http) IDAT
Processed data included within Sample table

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