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Sample GSM522309 Query DataSets for GSM522309
Status Public on Apr 19, 2010
Title Blood pool XX Cy5
Sample type genomic
 
Source name blood_pool_XX
Organism Homo sapiens
Characteristics gender: female
tissue: blood
sample type: Blood of 18 healthy persons
disease state: healthy
Extracted molecule genomic DNA
Extraction protocol DNAzol (Invitrogen) according to manufacturer's protocol
Label Cy5
Label protocol Sample_label_protocol_ch1 = DNA labeling protocol according to Enzo Life Sciences
 
Hybridization protocol Hybridization protocol available via www.agilent.com
Scan protocol Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
Description protocols according to manufacturer (Enzo Life Sciences)
Data processing Median Signal intensity minus median Background intensity; excluding negative values
 
Submission date Mar 15, 2010
Last update date Apr 19, 2010
Contact name Daoud Sie
E-mail(s) d.sie@vumc.nl
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL8693
Series (1)
GSE17047 Candidate driver genes in focal chromosomal aberrations of stage II colon cancer

Data table header descriptions
ID_REF
rMedianSignal median signal intensity channel 1
rBGMedianSignal background median intensity channel 1
VALUE median signal intensity channel 1 minus background median intensity channel 1, excluding negative values

Data table
ID_REF rMedianSignal rBGMedianSignal VALUE
4 435 158 277
5 372 158 214
6 736 159 577
7 402 163 239
8 417.5 163 254.5
9 426 162 264
10 349 161 188
11 410 161 249
12 386 157 229
13 465 160 305
14 602 156 446
15 634 161 473
16 608 158 450
17 569 156 413
18 674 160 514
20 649 158 491
22 548 158 390
23 615.5 159 456.5
24 484 157 327
25 632 156 476

Total number of rows: 100259

Table truncated, full table size 1934 Kbytes.




Supplementary file Size Download File type/resource
GSM522309_GSM522273_fresh_tumor_vs_poolXX.txt.gz 435.8 Kb (ftp)(http) TXT
GSM522309_MAF_251901511427_S01_CGH_v4_95_Feb07_1_1.txt.gz 31.8 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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