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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 18, 2010 |
| Title |
Agilent-019015 HD CGH Microarray (2X105K) Oxford design AMADID#019015 (Feature number version) |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
|
| Catalog number |
G4425A |
| |
|
| |
|
| Contributor(s) |
Ylstra B, Eijk P |
| Submission date |
Jun 10, 2009 |
| Last update date |
Jan 29, 2015 |
| Contact name |
Daoud Sie |
| E-mail(s) |
d.sie@vumc.nl
|
| Phone |
+31 20 4442428
|
| Organization name |
Vrije Universiteit Medical Center
|
| Department |
Pathology
|
| Lab |
Microarray Core Facility
|
| Street address |
De Boelelaan 1117
|
| City |
Amsterdam |
| ZIP/Postal code |
1081 HV |
| Country |
Netherlands |
| |
|
| Samples (231)
|
GSM416655, GSM416713, GSM522273, GSM522309, GSM522343, GSM601550
GSM601551, GSM601552, GSM601553, GSM601554, GSM601555, GSM601556, GSM601557, GSM601558, GSM601559, GSM601560, GSM601561, GSM601562, GSM601563, GSM601564, GSM601565, GSM601566, GSM601567, GSM601568, GSM601569, GSM601570, GSM601571, GSM601572, GSM601573, GSM601574, GSM601575, GSM601576, GSM601577, GSM601578, GSM601579, GSM601580, GSM601581, GSM746777, GSM746778, GSM746779, GSM746780, GSM746781, GSM746782, GSM746783, GSM746784, GSM746785, GSM746786, GSM746787, GSM746788, GSM746789, GSM746790, GSM746791, GSM746792, GSM746793, GSM746794, GSM746795, GSM746796, GSM746797, GSM746798, GSM746799, GSM746800, GSM746801, GSM746802, GSM746803, GSM746804, GSM746805, GSM746806, GSM746807, GSM746808, GSM746809, GSM746810, GSM746811, GSM746812, GSM746813, GSM746814, GSM746815, GSM746816, GSM746817, GSM746818, GSM746819, GSM746820, GSM746821, GSM746822, GSM746823, GSM746824, GSM746825, GSM746826, GSM746827, GSM746828, GSM746829, GSM774400, GSM774401, GSM774402, GSM774403, GSM774404, GSM774405, GSM774406, GSM774407, GSM774408, GSM774409, GSM774410, GSM774411, GSM774412, GSM774413, GSM774414, GSM774415, GSM774416, GSM774417, GSM774418, GSM774419, GSM774420, GSM774421, GSM774422, GSM774423, GSM774424, GSM774425, GSM774426, GSM774427, GSM774428, GSM774429, GSM774430, GSM774431, GSM774432, GSM774433, GSM774434, GSM774435, GSM774436, GSM774437, GSM774438, GSM774439, GSM774440, GSM774441, GSM774442, GSM851219, GSM851220, GSM851221, GSM851222, GSM851223, GSM851224, GSM851225, GSM851226, GSM851227, GSM851228, GSM851229, GSM851230, GSM851231, GSM851232, GSM851233, GSM851234, GSM851235, GSM851236, GSM851237, GSM851238, GSM851239, GSM851240, GSM851241, GSM851242, GSM851243, GSM851244, GSM851245, GSM851246, GSM851247, GSM851248, GSM851249, GSM851250, GSM851251, GSM851252, GSM851253, GSM851254, GSM851255, GSM851256, GSM851257, GSM851258, GSM851259, GSM851260, GSM851261, GSM908230, GSM912050, GSM912051, GSM922838, GSM922839, GSM922840, GSM922841, GSM922842, GSM922843, GSM922844, GSM922845, GSM922846, GSM922847, GSM922848, GSM922849, GSM922850, GSM922851, GSM922852, GSM922853, GSM922854, GSM922855, GSM922856, GSM922857, GSM922858, GSM922859, GSM922860, GSM922861, GSM922862, GSM922863, GSM922864, GSM922865, GSM922866, GSM922867, GSM922868, GSM922869, GSM922870, GSM922871, GSM922872, GSM922873, GSM922874, GSM922875, GSM922876, GSM922877, GSM922878, GSM922879, GSM922880, GSM922881, GSM922882, GSM922883, GSM922884, GSM922885, GSM922886, GSM1597958, GSM1597959, GSM1597960
|
| Series (13)
|
| GSE16575 |
An 82-Year old woman with a palpable lymph node |
| GSE17047 |
Candidate driver genes in focal chromosomal aberrations of stage II colon cancer |
| GSE24418 |
Genetic Aberrations Relate Early and Advanced Stage Ovarian Cancer and are Associated with Survival |
| GSE30155 |
Chromosomal profiles of high-grade cervical intraepithelial neoplasia relate to duration of preceding high-risk human papillomavirus infection |
| GSE31241 |
Distinct chromosomal aberrations in high-grade cervical intraepithelial neoplasia harbouring HPV16 versus HPV31 |
| GSE34575 |
Focal chromosomal aberrations in high-grade cervical intraepithelial neoplasia reveal hsa-miR-375 and EYA2 as drivers in HPV-mediated transformation |
| GSE36991 |
Ten percent of aberrant cells is sufficient for detection of DNA copy number alterations (part 4) |
| GSE36993 |
Ten percent of aberrant cells is sufficient for detection of DNA copy number alterations |
| GSE37141 |
Oligo array for CNV calling AUTS2 project [Agilent] |
| GSE37586 |
Identification of novel DNA copy number aberrations associated to GIST |
| GSE37657 |
AUTS2 project |
| GSE65453 |
Chromothripsis in healthy individuals affects multiple protein-coding genes and can result in severe congenital abnormalities in offspring [case 3] |
| GSE65454 |
Chromothripsis in healthy individuals affects multiple protein-coding genes and can result in severe congenital abnormalities in offspring. |
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| Relations |
| Alternative to |
GPL18628 |
| Data table header descriptions |
| ID |
|
| Row |
Row |
| Col |
Column |
| ControlType |
Control Type |
| ProbeName |
ProbeName |
| SystematicName |
Chromosomal Location |
| GB_RANGE |
Accession.version[start..end] |
| GB_ACC |
GenBankAccession |
| GENE_SYMBOL |
Gene Symbol |
| ACCESSION_STRING |
Accession String |
| DESCRIPTION |
Description |
| SPOT_ID |
|
| Data table |
| ID |
Row |
Col |
ControlType |
ProbeName |
SystematicName |
GB_RANGE |
GB_ACC |
GENE_SYMBOL |
ACCESSION_STRING |
DESCRIPTION |
SPOT_ID |
| 1 |
1 |
1 |
pos |
DarkCorner |
DarkCorner |
|
|
|
|
|
CONTROL: DarkCorner |
| 2 |
1 |
2 |
pos |
DarkCorner |
DarkCorner |
|
|
|
|
|
CONTROL: DarkCorner |
| 3 |
1 |
3 |
pos |
DarkCorner |
DarkCorner |
|
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|
|
|
CONTROL: DarkCorner |
| 4 |
1 |
4 |
|
A_16_P41263407 |
chr20:10288480-10288540 |
NC_000020.9[10288480..10288540] |
|
|
|
|
|
| 5 |
1 |
5 |
|
A_16_P01602551 |
chr6:143131299-143131359 |
NC_000006.10[143131299..143131359] |
NM_006734 |
HIVEP2 |
ref|NM_006734 |
Homo sapiens human immunodeficiency virus type I enhancer binding protein 2 (HIVEP2), mRNA. |
|
| 6 |
1 |
6 |
|
A_16_P20052226 |
chr14:55092592-55092652 |
NC_000014.7[55092592..55092652] |
AB075499 |
AB075499 |
gb|AB075499 |
Homo sapiens neuroblastoma cDNA, clone:Nbla00245, full insert sequence. |
|
| 7 |
1 |
7 |
|
A_14_P123930 |
chr13:83577436-83577496 |
NC_000013.9[83577436..83577496] |
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|
|
|
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| 8 |
1 |
8 |
|
A_16_P18001134 |
chr7:81675630-81675690 |
NC_000007.12[81675630..81675690] |
NM_000722 |
CAC2D1 |
ref|NM_000722 |
Homo sapiens calcium channel, voltage-dependent, alpha 2/delta subunit 1 (CACNA2D1), mRNA. |
|
| 9 |
1 |
9 |
|
A_16_P36326624 |
chr3:75914405-75914452 |
NC_000003.10[75914405..75914452] |
AK123776 |
AK123776 |
gb|AK123776|gb|BC084565 |
Homo sapiens cDNA FLJ41782 fis, clone IMR322018192, weakly similar to ZINC FINGER PROTEIN 90. |
|
| 10 |
1 |
10 |
|
A_14_P135228 |
chrX:104398757-104398817 |
NC_000023.9[104398757..104398817] |
NM_017416 |
IL1RAPL2 |
ref|NM_017416 |
Homo sapiens interleukin 1 receptor accessory protein-like 2 (IL1RAPL2), mRNA. |
|
| 11 |
1 |
11 |
|
A_16_P17690902 |
chr6:117822072-117822132 |
NC_000006.10[117822072..117822132] |
NM_002944 |
ROS1 |
ref|NM_002944 |
Homo sapiens v-ros UR2 sarcoma virus oncogene homolog 1 (avian) (ROS1), mRNA. |
|
| 12 |
1 |
12 |
|
A_16_P15854486 |
chr2:142560249-142560309 |
NC_000002.10[142560249..142560309] |
NM_018557 |
LRP1B |
ref|NM_018557 |
Homo sapiens low density lipoprotein-related protein 1B (deleted in tumors) (LRP1B), mRNA. |
|
| 13 |
1 |
13 |
|
A_14_P125206 |
chrX:150618776-150618836 |
NC_000023.9[150618776..150618836] |
NM_024082 |
PRRG3 |
ref|NM_024082 |
Homo sapiens proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) (PRRG3), mRNA. |
|
| 14 |
1 |
14 |
|
A_14_P101012 |
chr2:133064193-133064253 |
NC_000002.10[133064193..133064253] |
NM_001508 |
GPR39 |
ref|NM_001508 |
Homo sapiens G protein-coupled receptor 39 (GPR39), mRNA. |
|
| 15 |
1 |
15 |
|
A_16_P19331227 |
chr11:93402554-93402614 |
NC_000011.8[93402554..93402614] |
|
|
|
|
|
| 16 |
1 |
16 |
|
A_16_P15915765 |
chr2:167170454-167170514 |
NC_000002.10[167170454..167170514] |
|
|
|
|
|
| 17 |
1 |
17 |
|
A_14_P201485 |
chr2:215892641-215892701 |
NC_000002.10[215892641..215892701] |
NM_004044 |
ATIC |
ref|NM_004044 |
Homo sapiens 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (ATIC), mRNA. |
|
| 18 |
1 |
18 |
|
A_16_P19794939 |
chr13:43209990-43210050 |
NC_000013.9[43209990..43210050] |
BC068521 |
BC068521 |
gb|BC068521 |
Homo sapiens cDNA clone IMAGE:4817324, containing frame-shift errors. |
|
| 20 |
1 |
20 |
|
A_16_P18106865 |
chr7:126154765-126154825 |
NC_000007.12[126154765..126154825] |
NM_000845 |
GRM8 |
ref|NM_000845 |
Homo sapiens glutamate receptor, metabotropic 8 (GRM8), mRNA. |
|
| 22 |
1 |
22 |
|
A_14_P116760 |
chr1:11875964-11876024 |
NC_000001.9[11875964..11876024] |
|
|
|
|
|
Total number of rows: 101824
Table truncated, full table size 16013 Kbytes.
| Supplementary data files not provided |
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