|
| Status |
Public on Aug 22, 2012 |
| Title |
Early stage ovarian carcinoma T104 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
tissue: ovarian carcinoma tissue
sample: T104
age: 61
Stage: Ia
type: C
grade: 3
ct: yes
status: Dead
os (months): 13
progression: yes
pfs (months): 10
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNAzol (Invitrogen) according to manufacturer's protocol
|
| Label |
Cy3
|
| Label protocol |
DNA labeling protocol according to Enzo Life Sciences
|
| |
|
| Channel 2 |
| Source name |
Female reference DNA
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
tissue: blood pooled from 18 healthy individuals
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNAzol (Invitrogen) according to manufacturer's protocol
|
| Label |
Cy5
|
| Label protocol |
DNA labeling protocol according to Enzo Life Sciences
|
| |
|
| |
| Hybridization protocol |
Hybridization protocol available via www.agilent.com
|
| Scan protocol |
Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
|
| Description |
reference DNA is pooled DNA from the blood of 18 healthy individuals
raw data files: MAL_251901510436_S01_CGH-v4_95_Feb07_1_2.txt, MAL_251901510436_S01_CGH-v4_95_Feb07_1_2.txt
|
| Data processing |
Dewaving: The data have been de-waved as described in Van de Wiel et al. (2009) using the R package NoWaves. This is available from www.few.vu.nl/~mavdwiel/nowaves.html. Agilent 105K normals were used as calibration. Normalization: mode normalization.
|
| |
|
| Submission date |
Sep 28, 2010 |
| Last update date |
Aug 22, 2012 |
| Contact name |
Daoud Sie |
| E-mail(s) |
d.sie@vumc.nl
|
| Phone |
+31 20 4442428
|
| Organization name |
Vrije Universiteit Medical Center
|
| Department |
Pathology
|
| Lab |
Microarray Core Facility
|
| Street address |
De Boelelaan 1117
|
| City |
Amsterdam |
| ZIP/Postal code |
1081 HV |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL8693 |
| Series (1) |
| GSE24418 |
Genetic Aberrations Relate Early and Advanced Stage Ovarian Cancer and are Associated with Survival |
|
