GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM7710258
Query DataSets for GSM7710258
Status
Public on Apr 03, 2024
Title
Saline, Rep4
Sample type
genomic
Source name
Nucleus accumbens
Organism
Microtus ochrogaster
Characteristics
Sex: Male
age: Postnatal day 20
Extracted molecule
genomic DNA
Extraction protocol
Qiagen AllPrep
Label
Cy3, Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulfite converted DNA was amplified, fragmented and hybridised to Illumina HorvathMammalianMethylChip40 BeadChip using standard Illumina protocol
Scan protocol
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing
Data were checked for quality control measures and normalized by SeSaMe method in R statistical software
Submission date
Aug 14, 2023
Last update date
Apr 03, 2024
Contact name
Joshua Danoff
E-mail(s)
jsd5zs@virginia.edu
Organization name
University of Virginia
Street address
485 McCormick Road
City
Charlottesville
State/province
VA
ZIP/Postal code
22903
Country
USA
Platform ID
GPL28271
Series (2)
GSE240833
Maternal oxytocin treatment at birth increases epigenetic age in male offspring [array]
GSE240856
Maternal oxytocin treatment at birth increases epigenetic age in male offspring
Data table header descriptions
ID_REF
VALUE
Normalized by SeSaMe
ET015716_pvals
Data table
ID_REF
VALUE
ET015716_pvals
cg00000165
0.058994916
0.015862944
cg00001209
0.516506738
0.11196319
cg00001364
0.879796142
0.01303681
cg00001582
0.063442687
0.003807107
cg00002920
0.093864672
0.079314721
cg00003994
0.07196809
0.043781726
cg00004555
0.13951896
0.079314721
cg00005112
0.588516181
0.003578732
cg00005271
0.963307315
0.004345603
cg00006213
0.7304272
7.67E-04
cg00008998
0.502474104
0.948108384
cg00009248
0.709496403
0.004345603
cg00009319
0.448189647
0.384517766
cg00010445
0.176016893
0.079314721
cg00010903
0.892536045
0.044478528
cg00010926
0.954988534
0.005112474
cg00010977
0.932237965
0.012781186
cg00012521
0.343486916
0.093908629
cg00012879
0.318155908
0.185279188
cg00013189
0.020919023
7.67E-04
Total number of rows:
37554
Table truncated, full table size
1271 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM7710258_206902540039_R05C02_Grn.idat.gz
376.5 Kb
(ftp)
(http)
IDAT
GSM7710258_206902540039_R05C02_Red.idat.gz
379.8 Kb
(ftp)
(http)
IDAT
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
