|
Status |
Public on Sep 28, 2023 |
Title |
Sample.15.Hector's Dolphin.205138660001_R06C01 |
Sample type |
genomic |
|
|
Channel 1 |
Source name |
Skin
|
Organism |
Cephalorhynchus hectori hectori |
Characteristics |
tissue: Skin basename: 205138660001_R06C01 species common name: Hector's Dolphin female: 1 canbeusedforagingstudies: Yes
|
Treatment protocol |
Standard Illumina Protocol
|
Growth protocol |
DNA extracted from tissues
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from skin using a phenol-chloroform protocol modified for small skin samples as described in C. S. Baker et al. 1994. PMID: 7921358
|
Label |
Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Channel 2 |
Source name |
Skin
|
Organism |
Cephalorhynchus hectori hectori |
Characteristics |
tissue: Skin basename: 205138660001_R06C01 species common name: Hector's Dolphin female: 1 canbeusedforagingstudies: Yes
|
Treatment protocol |
Standard Illumina Protocol
|
Growth protocol |
DNA extracted from tissues
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from skin using a phenol-chloroform protocol modified for small skin samples as described in C. S. Baker et al. 1994. PMID: 7921358
|
Label |
Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridized to the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner settings
|
Description |
Che11NZ05
|
Data processing |
SeSaME normalization as described in W. Zhou et al. 2018. PMID: 30085201
|
|
|
Submission date |
Aug 31, 2023 |
Last update date |
Sep 28, 2023 |
Contact name |
Keith Hernandez |
E-mail(s) |
keith.hernandez2011@gmail.com
|
Organization name |
Oregon State University
|
Department |
Marine Mammal Institute
|
Lab |
Cetacean Conservation and Genomics Laboratory
|
Street address |
2030 SE Marine Science Drive
|
City |
Newport |
State/province |
OR |
ZIP/Postal code |
97365 |
Country |
USA |
|
|
Platform ID |
GPL28271 |
Series (1) |
GSE242072 |
Epigenetic aging of Māui and Hector's dolphins |
|