|
| Status |
Public on Sep 28, 2023 |
| Title |
Sample.120.Maui Dolphin.206129790003_R03C01 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Skin
|
| Organism |
Cephalorhynchus hectori maui |
| Characteristics |
tissue: Skin
basename: 206129790003_R03C01
species common name: Maui Dolphin
female: 1
canbeusedforagingstudies: Yes
|
| Treatment protocol |
Standard Illumina Protocol
|
| Growth protocol |
DNA extracted from tissues
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from skin using a phenol-chloroform protocol modified for small skin samples as described in C. S. Baker et al. 1994. PMID: 7921358
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Channel 2 |
| Source name |
Skin
|
| Organism |
Cephalorhynchus hectori maui |
| Characteristics |
tissue: Skin
basename: 206129790003_R03C01
species common name: Maui Dolphin
female: 1
canbeusedforagingstudies: Yes
|
| Treatment protocol |
Standard Illumina Protocol
|
| Growth protocol |
DNA extracted from tissues
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from skin using a phenol-chloroform protocol modified for small skin samples as described in C. S. Baker et al. 1994. PMID: 7921358
|
| Label |
Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| |
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridized to the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner settings
|
| Description |
NI11-14
|
| Data processing |
SeSaME normalization as described in W. Zhou et al. 2018. PMID: 30085201
|
| |
|
| Submission date |
Aug 31, 2023 |
| Last update date |
Sep 28, 2023 |
| Contact name |
Keith Hernandez |
| E-mail(s) |
keith.hernandez2011@gmail.com
|
| Organization name |
Oregon State University
|
| Department |
Marine Mammal Institute
|
| Lab |
Cetacean Conservation and Genomics Laboratory
|
| Street address |
2030 SE Marine Science Drive
|
| City |
Newport |
| State/province |
OR |
| ZIP/Postal code |
97365 |
| Country |
USA |
| |
|
| Platform ID |
GPL28271 |
| Series (1) |
| GSE242072 |
Epigenetic aging of Māui and Hector's dolphins |
|
