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Sample GSM850082 Query DataSets for GSM850082
Status Public on Oct 18, 2012
Title WEEV-058
Sample type RNA
 
Source name infected culture
Organisms Chlorocebus aethiops; Alphavirus
Characteristics cell line: Vero
infection: WEEV CO92-1356
purpose: Training
Extracted molecule total RNA
Extraction protocol RNA extracted using Trizol extraction protocol
Label Cy3
Label protocol amino-allyl Cy3 dye coupled to cDNA
 
Hybridization protocol 70 degree incubation for 12 hours
Scan protocol scanned using GenePix 4000B scanner
Description hybridization of infected culture for use in training VIPR HMM
Data processing None. Regarding the submission of raw (not normalized) data, the microarray data provided represents an unconventional use of microarrays as a diagnostic tool as opposed to the conventional use of microarrays to study gene expression patterns. Each software tool that has been developed to analyze diagnostic microarray data employs its own normalization method. Thus, the standard input to these programs is non-normalized data which is then independently processed by whatever software tool is chosen.
 
Submission date Dec 16, 2011
Last update date Oct 18, 2012
Contact name Adam F Allred
E-mail(s) adam.f.allred@gmail.com
Organization name Washington University in St. Louis, School of Medicine
Street address 660 S. Euclid
City St. Louis
State/province MO
ZIP/Postal code 63139
Country USA
 
Platform ID GPL15022
Series (1)
GSE34490 VIPR HMM: A hidden Markov model for detecting recombination with microbial detection arrays

Data table header descriptions
ID_REF
VALUE raw signal intensity

Data table
ID_REF VALUE
R1.1_000001 617
R1.1_000002 2193
R1.1_000003 2643
R1.1_000004 722
R1.1_000005 666
R1.1_000006 65535
R1.1_000007 178
R1.1_000008 65535
R1.1_000009 103
R1.1_000010 130
R1.1_000011 112
R1.1_000012 100
R1.1_000013 643
R1.1_000014 1793
R1.1_000015 132
R1.1_000016 180
R1.1_000017 527
R1.1_000018 141
R1.1_000019 1179
R1.1_000020 6213

Total number of rows: 43414

Table truncated, full table size 694 Kbytes.




Supplementary file Size Download File type/resource
GSM850082_253127910015_2.gpr.gz 2.7 Mb (ftp)(http) GPR
Processed data not provided for this record

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