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Sample GSM850109 Query DataSets for GSM850109
Status Public on Oct 18, 2012
Title VEEV-093
Sample type RNA
 
Source name infected culture
Organisms Chlorocebus aethiops; Alphavirus
Characteristics cell line: Vero
infection: VEEV 68U201
purpose: Training
Extracted molecule total RNA
Extraction protocol RNA extracted using Trizol extraction protocol
Label Cy3
Label protocol amino-allyl Cy3 dye coupled to cDNA
 
Hybridization protocol 70 degree incubation for 12 hours
Scan protocol scanned using GenePix 4000B scanner
Description hybridization of infected culture for use in training VIPR HMM
Data processing None. Regarding the submission of raw (not normalized) data, the microarray data provided represents an unconventional use of microarrays as a diagnostic tool as opposed to the conventional use of microarrays to study gene expression patterns. Each software tool that has been developed to analyze diagnostic microarray data employs its own normalization method. Thus, the standard input to these programs is non-normalized data which is then independently processed by whatever software tool is chosen.
 
Submission date Dec 16, 2011
Last update date Oct 18, 2012
Contact name Adam F Allred
E-mail(s) adam.f.allred@gmail.com
Organization name Washington University in St. Louis, School of Medicine
Street address 660 S. Euclid
City St. Louis
State/province MO
ZIP/Postal code 63139
Country USA
 
Platform ID GPL15022
Series (1)
GSE34490 VIPR HMM: A hidden Markov model for detecting recombination with microbial detection arrays

Data table header descriptions
ID_REF
VALUE raw signal intensity

Data table
ID_REF VALUE
R1.1_000001 1070
R1.1_000002 65535
R1.1_000003 731
R1.1_000004 65535
R1.1_000005 916
R1.1_000006 48098
R1.1_000007 452
R1.1_000008 65535
R1.1_000009 73
R1.1_000010 4601
R1.1_000011 198
R1.1_000012 384
R1.1_000013 249
R1.1_000014 65535
R1.1_000015 85
R1.1_000016 62
R1.1_000017 88
R1.1_000018 65535
R1.1_000019 641
R1.1_000020 65535

Total number of rows: 43414

Table truncated, full table size 678 Kbytes.




Supplementary file Size Download File type/resource
GSM850109_253127910024_1.gpr.gz 2.7 Mb (ftp)(http) GPR
Processed data not provided for this record

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