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| Status |
Public on Mar 31, 2015 |
| Title |
PV D05 |
| Sample type |
RNA |
| |
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| Source name |
PB_neutrophils
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| Organism |
Homo sapiens |
| Characteristics |
disease status: PV
|
| Treatment protocol |
de novo MPN patients
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extracted using Trizol according to manufacturure's recommendations
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| Label |
Biotin
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| Label protocol |
Please see Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (http://www.affymetrix.com/support/technical/byproduct.affx?product=amplification)
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| Hybridization protocol |
Please see Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (http://www.affymetrix.com/support/technical/byproduct.affx?product=amplification)
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| Scan protocol |
Please see Expression Analysis Technical Manual, with Specific Protocols for Use with the Hybridization, Wash, and Stain Kit (http://www.affymetrix.com/support/technical/byproduct.affx?product=amplification)
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| Description |
Gene expression array
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| Data processing |
RMA : log2 transromation : quantile normalization : median polish using Partek GS version 6.5
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| Submission date |
Jun 06, 2012 |
| Last update date |
Mar 31, 2015 |
| Contact name |
Mike Harr |
| E-mail(s) |
harrm@mskcc.org
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| Organization name |
Memorial Sloan-Ketering Cancer Center
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| Lab |
Nimer
|
| Street address |
1275 York Ave.
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
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| Platform ID |
GPL4685 |
| Series (1) |
| GSE38543 |
Expression of Autophagy Genes in Myeloproliferative Disorders |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
log2 RMA expression level |
| Data table |
| ID_REF |
VALUE |
| 1007_s_at |
2.24616 |
| 1053_at |
2.4977 |
| 117_at |
3.53282 |
| 121_at |
2.57316 |
| 1255_g_at |
2.17307 |
| 1294_at |
3.05378 |
| 1316_at |
2.24109 |
| 1320_at |
2.1583 |
| 1405_i_at |
3.35447 |
| 1431_at |
2.12037 |
| 1438_at |
2.14062 |
| 1487_at |
2.80258 |
| 1494_f_at |
2.31992 |
| 1598_g_at |
2.62376 |
| 160020_at |
2.40042 |
| 1729_at |
2.92742 |
| 177_at |
2.27065 |
| 1773_at |
2.29825 |
| 179_at |
2.62488 |
| 1861_at |
2.57293 |
Total number of rows: 22406
Table truncated, full table size 412 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM945079_5202764005791172120104.D05.CEL.gz |
2.5 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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