GPL19472[Accession] - GEO DataSets

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Select item 2000637151.

Transcriptional profiles of Salmonella Typhimurium 4/74 parent and relA spoT, rpoS and dksA strains during stationary phase, and RNA polymerase distribution as determined by chromatin immunoprecipitation in parent, relA spoT and dksA strains

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by array; Genome binding/occupancy profiling by array

Platforms:: GPL19472 GPL13609
101 Samples

Download data: GPR, TXT

Series

Accession:: GSE63715

ID:: 200063715

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000637112.

RNA polymerase binding sites revealed by ChIP-chip in S. Typhimurium wild-type, ΔrelAΔspoT (ppGpp0), and ΔdksA strains at early stationary phase (ESP) and late stationary phase (LSP)

(Submitter supplied) S. Typhimurium parent, ppGpp0 and dksA strains were grown to OD's of 2.3 (ESP) and 4.2 (LSP) and subjected to ChIP-chip analysis at 60 nt resolution.

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Type:: Genome binding/occupancy profiling by array

Platform:: GPL19472
36 Samples

Download data: GPR

Series

Accession:: GSE63711

ID:: 200063711

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000194723.

Oxford Gene Technology 4x44K S. Typhimurium SL1344 60-mer oligonucleotide array

(Submitter supplied) Design ID 019399 Protocol: The oligonucleotide array is made up of 4 X 44K 60 mer oligonucleotides printed onto glass slides

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2 Series
36 Samples

Download data

Platform

Accession:: GPL19472

ID:: 100019472

Select item 3015560754.

LSP_dksA_PLUS_R3_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔdksA strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556075

ID:: 301556075

Select item 3015560745.

LSP_dksA_PLUS_R2_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔdksA strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556074

ID:: 301556074

Select item 3015560736.

LSP_dksA_PLUS_R1_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔdksA strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556073

ID:: 301556073

Select item 3015560707.

LSP_dksA_MINUS_R1_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔdksA strain grown to LSP (OD600 = 4.2) and ChIP-chip performed minus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556070

ID:: 301556070

Select item 3015560698.

LSP_ppGpp0_PLUS_R3_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔrelAΔspoT (ppGpp0) strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556069

ID:: 301556069

Select item 3015560689.

LSP_ppGpp0_PLUS_R2_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔrelAΔspoT (ppGpp0) strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556068

ID:: 301556068

Select item 30155606710.

LSP_ppGpp0_PLUS_R1_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔrelAΔspoT (ppGpp0) strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556067

ID:: 301556067

Select item 30155606611.

LSP_ppGpp0_MINUS_R3_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔrelAΔspoT (ppGpp0) strain grown to LSP (OD600 = 4.2) and ChIP-chip performed minus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556066

ID:: 301556066

Select item 30155606512.

LSP_ppGpp0_MINUS_R2_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔrelAΔspoT (ppGpp0) strain grown to LSP (OD600 = 4.2) and ChIP-chip performed minus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556065

ID:: 301556065

Select item 30155606413.

LSP_ppGpp0_MINUS_R1_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔrelAΔspoT (ppGpp0) strain grown to LSP (OD600 = 4.2) and ChIP-chip performed minus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556064

ID:: 301556064

Select item 30155606314.

LSP_WT_PLUS_R3_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 parent strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556063

ID:: 301556063

Select item 30155606215.

LSP_WT_MINUS_R3_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 parent strain grown to LSP (OD600 = 4.2) and ChIP-chip performed minus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556062

ID:: 301556062

Select item 30155606116.

LSP_WT_PLUS_R2_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 parent strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556061

ID:: 301556061

Select item 30155606017.

LSP_WT_MINUS_R2_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 parent strain grown to LSP (OD600 = 4.2) and ChIP-chip performed minus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556060

ID:: 301556060

Select item 30155605918.

LSP_WT_PLUS_R1_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 parent strain grown to LSP (OD600 = 4.2) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556059

ID:: 301556059

Select item 30155605819.

LSP_WT_MINUS_R1_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 parent strain grown to LSP (OD600 = 4.2) and ChIP-chip performed minus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556058

ID:: 301556058

Select item 30155605720.

ESP_dksA_PLUS_R3_ChIP

Organism:: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: SL1344 ΔdksA strain grown to ESP (OD600 = 2.3) and ChIP-chip performed plus antibody. (channel 1) Genomic DNA from S. Typhimurium SL1344 (channel 2)

Platform:: GPL19472
Series:: GSE63711 GSE63715

Download data: GPR

Sample

Accession:: GSM1556057

ID:: 301556057

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