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Platform GPL13609 Query DataSets for GPL13609
Status Public on May 20, 2011
Title SALSA 2 IFR Salmonella 8K Arrays
Technology type spotted DNA/cDNA
Distribution non-commercial
Organisms Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Manufacturer Institute of Food research, Norwich, UK
Manufacture protocol PCR product microarray of ORF's from S. Typhimurium LT2, S. Typhimurium SL1344, S. Typhimurium DT104, S. Enteritidis PT4, and S. Gallinarum 287/91. For the description of PCR amplification and printing procedures see:
Clements et al., (2002) PNAS 99(13): 8784-8789;
Nagy et al., (2006) Infect. Immun. 74(10):5914-5925
 
 
Contributor(s) Thompson A, Lucchini S, Shearer N
Submission date May 18, 2011
Last update date May 20, 2011
Contact name Neil Shearer
E-mail(s) neil.shearer@ifr.ac.uk
Organization name Institute of Food Research
Department Gut Health and Food Safety
Lab Salmonella
Street address Colney Lane
City Norwich
State/province Norfolk
ZIP/Postal code NR47UA
Country United Kingdom
 
Samples (163) GSM726956, GSM726957, GSM726958, GSM726959, GSM726960, GSM726961 
Series (10)
GSE29399 Salmonella Typhimurium: control vs. Deoxynivalenol (DON) treatment
GSE30923 Salmonella Typhimurium: control vs. cortisol treatment
GSE30924 Salmonella Typhimurium: wild type vs. ∆scsA mutant

Data table header descriptions
ID
BLOCK Array layout is 4x4 blocks numbered 1-16 from left to right
ROW block row 1-21
COLUMN Block column 1-24
SPOT
SYNONYM Gene name
ORF
SPOT_ID

Data table
ID BLOCK ROW COLUMN SPOT SYNONYM ORF SPOT_ID
1 1 1 1 STM2048 pduM STM2048
2 1 1 2 STM2055 pduU STM2055
3 1 1 3 STM1925 flhD STM1925
4 1 1 4 STM1956 fliA STM1956
5 1 1 5 STM3242 tdcD STM3242
6 1 1 6 STM1258 STM1258
7 1 1 7 STM1396 ssaE STM1396
8 1 1 8 STM1404 sseF STM1404
9 1 1 9 STM2266 apbE STM2266
10 1 1 10 STM1947 uvrY STM1947
11 1 1 11 STM1519 marA STM1519
12 1 1 12 STM1394 ssaC STM1394
13 1 1 13 STM2818 gshA STM2818
14 1 1 14 STM2785 tctD STM2785
15 1 1 15 STM2301 pqaB STM2301
16 1 1 16 STM1444 slyA STM1444
17 1 1 17 STM1867 pagK STM1867
18 1 1 18 STM1979 fliP STM1979
19 1 1 19 PSLT038 spvC PSLT038
20 1 1 20 PSLT035 PSLT035

Total number of rows: 8064

Table truncated, full table size 322 Kbytes.




Download family Format
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Supplementary data files not provided

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