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Series GSE63715 Query DataSets for GSE63715
Status Public on May 31, 2015
Title Transcriptional profiles of Salmonella Typhimurium 4/74 parent and relA spoT, rpoS and dksA strains during stationary phase, and RNA polymerase distribution as determined by chromatin immunoprecipitation in parent, relA spoT and dksA strains
Platform organisms Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Sample organism Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Experiment type Expression profiling by array
Genome binding/occupancy profiling by array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 26039089
Submission date Nov 28, 2014
Last update date Jan 08, 2020
Contact name Arthur Thompson
E-mail(s) arthur.thompson@ifr.ac.uk
Phone 01603 255181
Organization name Institute of Food Research
Street address Colney Lane
City Norwich
ZIP/Postal code NR4 7UA
Country United Kingdom
 
Platforms (2)
GPL13609 SALSA 2 IFR Salmonella 8K Arrays
GPL19472 Oxford Gene Technology 4x44K S. Typhimurium SL1344 60-mer oligonucleotide array
Samples (101)
GSM1556038 ESP_WT_MINUS_R1_ChIP
GSM1556039 ESP_WT_PLUS_R1_ChIP
GSM1556040 ESP_WT_MINUS_R2_ChIP
This SuperSeries is composed of the following SubSeries:
GSE63711 RNA polymerase binding sites revealed by ChIP-chip in S. Typhimurium wild-type, ΔrelAΔspoT (ppGpp0), and ΔdksA strains at early stationary phase (ESP) and late stationary phase (LSP)
GSE63713 Transcriptomic profiles of S. Typhimurium SL1344 parent strain and ΔdksA and ΔrelAΔspoTΔdksA mutant strains grown to various optical densities during late-log and stationary phase in LB aerobic batch culture
GSE63714 Transcriptomic profiles of S. Typhimurium SL1344 parent strain and ΔrpoS and ΔrelAΔspoT and ΔrelAΔspoTΔrpoS mutant strains grown to various optical densities during late-log and stationary phase in LB aerobic batch culture
Relations
BioProject PRJNA268952

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63715_RAW.tar 201.5 Mb (http)(custom) TAR (of GPR, TXT)

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