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Quantitative modeling of transcription factor binding specificities using DNA shape
PubMed Full text in PMC Similar studies Analyze with GEO2R
Protein−DNA binding in the absence of specific base-pair recognition
Current DNA motif models can lead to incorrect hypotheses about the genomic recruitment of transcription factors
PubMed Full text in PMC Similar studies SRA Run Selector
Stability selection for regression-based models of transcription factor-DNA binding specificity
Base-resolution methylation patterns accurately predict transcription factor bindings in vivo
Context-dependent gene regulation by homeodomain transcription factor complexes revealed by shape-readout deficient proteins
Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights
Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding
QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants
PubMed Full text in PMC Similar studies
Unraveling determinants of transcription factor binding outside the core binding site
UT/TH_all-8mer-v1
Deconvolving the recognition of DNA shape from sequence
DeepTFactor, a deep learning-based tool for the identification of transcription factors
Evaluation of methods for modeling transcription factor sequence specificity
Novel Mechanism of Bispecificity in Forkhead Transcription Factors
DNase I hypersensitivity and algorithmic prediction of TF binding in early pancreatic mES directed differentiation
Genomic regions flanking E-box sites influence DNA binding specificity of bHLH transcription factors through DNA shape
Genomic regions flanking E-box sites influence DNA binding specificity of bHLH transcription factors through DNA shape (validation)
Genomic regions flanking E-box sites influence DNA binding specificity of bHLH transcription factors through DNA shape (different concentrations)
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