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Series GSE181732 Query DataSets for GSE181732
Status Public on Oct 01, 2021
Title Transposon-triggered innate immune response confers cancer resistance to the blind mole rat [array]
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organisms Mus musculus; Nannospalax ehrenbergi
Experiment type Methylation profiling by genome tiling array
Summary Blind mole rats (BMRs) are small rodents, characterized by exceptionally long lifespan (> 21 years) and resistance to both spontaneous and induced tumorigenesis. Here we report that cancer resistance in the BMR is mediated by retrotransposable elements (RTEs). BMR cells and tissues express very low levels of DNA methyltransferase 1 (DNMT1). Upon cell hyperplasia, the BMR genome DNA loses methylation, resulting in activation of RTEs. Up-regulated RTEs form cytoplasmic RNA/DNA hybrids, which activate cGAS-STING pathway to induce cell death. Although this mechanism is enhanced in the BMR, we show that it functions in mice and human. We propose that RTEs were coopted to serve as tumor suppressors that monitor cell proliferation and are activated in premalignant cells to trigger cell death via activation of innate immune response. RTEs activation is a double-edged sword, serving as a tumor suppressor but in late life contributing to aging via induction of sterile inflammation.
 
Overall design Using a custom Illumina chip HorvathMammalMethylChip40, we compared methylation of 37K conserved CpG sites between blind mole rat and mouse fibrolasts for both young and overproliferated cells. Five cell lines from each species were used for paired comparison.
 
Contributor(s) Horvath S, Zhao Y, Gorbunova V
Citation(s) 34556881
Submission date Aug 09, 2021
Last update date Dec 31, 2021
Contact name Yang Zhao
E-mail(s) yangzhao926@outlook.com
Organization name University of Rochester
Department Biology
Street address 60 Crittenden Blvd, Apt1240
City Rochester
State/province NY
ZIP/Postal code 14620
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (20)
GSM5510111 BMR1-Y
GSM5510112 BMR1-O
GSM5510113 BMR2-Y
This SubSeries is part of SuperSeries:
GSE181733 Transposon-triggered innate immune response confers cancer resistance to the blind mole rat
Relations
BioProject PRJNA753124

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE181732_RAW.tar 14.9 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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