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Series GSE35162

Query DataSets for GSE35162

Status

Public on May 09, 2012

Title

FOSL1 as a candidate target gene for 11q12 rearrangements in desmoplastic fibroblastoma

Organism

Homo sapiens

Experiment type

Expression profiling by array
Third-party reanalysis

Summary

Global gene expression analysis of desmoplastic fibroblastoma (DF) and histologically similar tumors. FOSL1 is identified as a candidate target gene for the 11q12 rearrangments in DF.

Overall design

RNA was extracted from 3 frozen desmoplastic fibroblastoma (DF) biopsies and hybridized onto Affymetrix Human Gene 1.0 ST arrays. RNA from 6 myxofibrosarcoma (MFS), 6 desmoid fibromatosis (DFM), 5 solitary fibrous tumor (SFT) and 17 low-grade fibromyxoid sarcomas (LGFMS) were used as controls.

The control dataset has been previously published and is available in the GEO database under Series accession GSE24369.

The complete dataset representing: (1) the 3 desmoplastic fibroblastoma Samples and (2) the 34 control Samples from Series GSE24369 (re-processed using RMA), is linked below as a supplementary file.

Contributor(s)

Macchia G, Trombetta D, Möller E, Mertens F, Storlazzi CT, Debiec-Rychter M, Sciot R, Nord KH

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Submission date

Jan 17, 2012

Last update date

Jul 26, 2018

Contact name

Karolin H Nord

Organization name

Lund University

Department

Dept of Clinical Genetics

Street address

BMC C13

City

Lund

ZIP/Postal code

SE-22184

Country

Sweden

Platforms (1)

GPL6244

[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]

Samples (3)

GSM862844	Desmoplastic fibroblastoma 2
GSM862845	Desmoplastic fibroblastoma 3
GSM862846	Desmoplastic fibroblastoma 6

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BioProject

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE35162_RAW.tar	11.3 Mb	(http)(custom)	TAR (of CEL)
GSE35162_complete_dataset.txt.gz	4.0 Mb	(ftp)(http)	TXT
Processed data included within Sample table
Processed data are available on Series record