|
Status |
Public on Apr 04, 2020 |
Title |
Uveal melanoma, sample 10 |
Sample type |
genomic |
|
|
Source name |
primary uveal melanoma, enucleation
|
Organism |
Homo sapiens |
Characteristics |
cell type: Uveal melanoma gep: Class 2
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was isolated using QIAamp DNA Mini Kit (Qiagen) according to standard instuctions.
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K array using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
beta.201404478.01 MM10
|
Data processing |
ChAMP pipeline in R (2.12.4)
|
|
|
Submission date |
Apr 26, 2019 |
Last update date |
Apr 05, 2020 |
Contact name |
Matthew G. Field |
Organization name |
University of Miami
|
Street address |
1501 NW 10th Avenue
|
City |
Miami |
State/province |
FL |
ZIP/Postal code |
33136 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE130354 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [BeadChip 450K] |
GSE130357 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas |
|