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Sample GSM4411969 Query DataSets for GSM4411969
Status Public on Jul 02, 2020
Title genomic DNA methylation from mouse3640-liverQ175
Sample type genomic
 
Source name Q175_F_Liver
Organism Mus musculus
Characteristics basename: 202897220090_R05C01
strain background: C57B/l6J
age: 6m
Sex: F
genotype: Q175
tissue: Liver
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from mouse tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from mouse3640-liverQ175
3640-liver
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147002 DNA methylation profiles from a mouse model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.475500445992433
cg00001209 0.922574046407097
cg00001364 0.89666082620844
cg00001582 0.0555313191273768
cg00002920 0.703831787957303
cg00003994 0.0356480330923774
cg00004555 0.0658944617503306
cg00005112 0.895253205992484
cg00005271 0.976604985823408
cg00006213 0.888849308093124
cg00008998 0.483647047754285
cg00009248 0.924682673346929
cg00009319 0.41413435837412
cg00010445 0.77431753713257
cg00010903 0.567690987287756
cg00010926 0.872895541594506
cg00010977 0.961783469710495
cg00012521 0.576611824144377
cg00012879 0.504515975450414
cg00013189 0.0326607054354514

Total number of rows: 37554

Table truncated, full table size 1066 Kbytes.




Supplementary file Size Download File type/resource
GSM4411969_202897220090_R05C01_Grn.idat.gz 383.9 Kb (ftp)(http) IDAT
GSM4411969_202897220090_R05C01_Red.idat.gz 383.8 Kb (ftp)(http) IDAT
Processed data included within Sample table

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