|
| Status |
Public on Jul 02, 2020 |
| Title |
genomic DNA methylation from mouse3714-ctxWT |
| Sample type |
genomic |
| |
|
| Source name |
WT_M_Cortex
|
| Organism |
Mus musculus |
| Characteristics |
basename: 202897220051_R04C02
strain background: C57B/l6J
age: 6m
Sex: M
genotype: WT
tissue: Cortex
|
| Treatment protocol |
Standard Illumina Protocol
|
| Growth protocol |
DNA extracted from mouse tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted
|
| Label |
cy3, cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
genomic DNA methylation from mouse3714-ctxWT
3714-ctx
|
| Data processing |
SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
|
| |
|
| Submission date |
Mar 15, 2020 |
| Last update date |
Jul 04, 2020 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL28271 |
| Series (2) |
| GSE147002 |
DNA methylation profiles from a mouse model of Huntington's disease |
| GSE147004 |
DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species |
|
