|
Status |
Public on Jul 02, 2020 |
Title |
genomic DNA methylation from mouse3510-ctxWT |
Sample type |
genomic |
|
|
Source name |
WT_F_Cortex
|
Organism |
Mus musculus |
Characteristics |
basename: 202897220051_R06C02 strain background: C57B/l6J age: 6m Sex: F genotype: WT tissue: Cortex
|
Treatment protocol |
Standard Illumina Protocol
|
Growth protocol |
DNA extracted from mouse tissue
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted
|
Label |
cy3, cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
genomic DNA methylation from mouse3510-ctxWT 3510-ctx
|
Data processing |
SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
|
|
|
Submission date |
Mar 15, 2020 |
Last update date |
Jul 04, 2020 |
Contact name |
Steve Horvath |
E-mail(s) |
shorvath@altoslabs.com
|
Organization name |
University of California, Los Angeles
|
Department |
Human Genetics
|
Lab |
Horvath
|
Street address |
695 Charles E. Young Drive South, Box 708822
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-7088 |
Country |
USA |
|
|
Platform ID |
GPL28271 |
Series (2) |
GSE147002 |
DNA methylation profiles from a mouse model of Huntington's disease |
GSE147004 |
DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species |
|