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Sample GSM4412005 Query DataSets for GSM4412005
Status Public on Jul 02, 2020
Title genomic DNA methylation from mouse3631-strQ175
Sample type genomic
 
Source name Q175_F_Striatum
Organism Mus musculus
Characteristics basename: 202897220025_R05C01
strain background: C57B/l6J
age: 6m
Sex: F
genotype: Q175
tissue: Striatum
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from mouse tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from mouse3631-strQ175
3631-str
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147002 DNA methylation profiles from a mouse model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.475804446551408
cg00001209 0.438844591001482
cg00001364 0.910591889719431
cg00001582 0.0531617189251458
cg00002920 0.616528400989195
cg00003994 0.0363845867105175
cg00004555 0.0904467979692547
cg00005112 0.491350212633447
cg00005271 0.727171709494934
cg00006213 0.801785155949431
cg00008998 0.506937096693448
cg00009248 0.886777022842267
cg00009319 0.452739458653386
cg00010445 0.627628681748223
cg00010903 0.553153827893094
cg00010926 0.904283705844951
cg00010977 0.957970396791164
cg00012521 0.824020737379912
cg00012879 0.628312037122315
cg00013189 0.0399253759941135

Total number of rows: 37554

Table truncated, full table size 1066 Kbytes.




Supplementary file Size Download File type/resource
GSM4412005_202897220025_R05C01_Grn.idat.gz 384.6 Kb (ftp)(http) IDAT
GSM4412005_202897220025_R05C01_Red.idat.gz 385.0 Kb (ftp)(http) IDAT
Processed data included within Sample table

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