NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4412009 Query DataSets for GSM4412009
Status Public on Jul 02, 2020
Title genomic DNA methylation from mouse3631-cblQ175
Sample type genomic
 
Source name Q175_F_Cerebellum
Organism Mus musculus
Characteristics basename: 202897220025_R03C02
strain background: C57B/l6J
age: 6m
Sex: F
genotype: Q175
tissue: Cerebellum
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from mouse tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from mouse3631-cblQ175
3631-cbl
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147002 DNA methylation profiles from a mouse model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.48511944763843
cg00001209 0.927348220446387
cg00001364 0.902710487281295
cg00001582 0.0594487073983674
cg00002920 0.653629833391796
cg00003994 0.0340966217210315
cg00004555 0.0737584704708947
cg00005112 0.856126160064905
cg00005271 0.966472720317279
cg00006213 0.787318455034874
cg00008998 0.510286451546425
cg00009248 0.789713145625514
cg00009319 0.468659569571076
cg00010445 0.569905055583755
cg00010903 0.579846194385884
cg00010926 0.906550258343018
cg00010977 0.813579705955141
cg00012521 0.844680837749271
cg00012879 0.628419227590507
cg00013189 0.0323153706936216

Total number of rows: 37554

Table truncated, full table size 1067 Kbytes.




Supplementary file Size Download File type/resource
GSM4412009_202897220025_R03C02_Grn.idat.gz 383.5 Kb (ftp)(http) IDAT
GSM4412009_202897220025_R03C02_Red.idat.gz 385.0 Kb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap