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Sample GSM4412029 Query DataSets for GSM4412029
Status Public on Jul 02, 2020
Title genomic DNA methylation from sheepBloodHD842Control
Sample type genomic
 
Source name Control_female_Blood
Organism Ovis aries
Characteristics genotype huntington: Control
age (years): 4.25
Sex: female
tissue: Blood
basename: 203203210131_R05C01
Treatment protocol Standard Illumina Protocol
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from sheepBloodHD842Control
HD842
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147003 DNA methylation profiles from a transgenic sheep model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.667495892006267
cg00001209 0.888486606353715
cg00001364 0.910420142449762
cg00001582 0.0447849358421311
cg00002920 0.52013642926035
cg00003994 0.0571806687946949
cg00004555 0.189199906157353
cg00005112 0.783522253143512
cg00005271 0.974775708910028
cg00006213 0.940037258993622
cg00008998 0.929920237482085
cg00009248 0.813381166889188
cg00009319 0.920123564934255
cg00010445 0.0595700394557915
cg00010903 0.925774597162489
cg00010926 0.916626600802473
cg00010977 0.92891998166345
cg00012521 0.936265073770706
cg00012879 0.846479544787244
cg00013189 0.0846663324371478

Total number of rows: 37554

Table truncated, full table size 1065 Kbytes.




Supplementary file Size Download File type/resource
GSM4412029_203203210131_R05C01_Grn.idat.gz 381.9 Kb (ftp)(http) IDAT
GSM4412029_203203210131_R05C01_Red.idat.gz 377.9 Kb (ftp)(http) IDAT
Processed data included within Sample table

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