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Sample GSM4412060 Query DataSets for GSM4412060
Status Public on Jul 02, 2020
Title genomic DNA methylation from sheepBloodHD841Transgenic
Sample type genomic
 
Source name Transgenic_female_Blood
Organism Ovis aries
Characteristics genotype huntington: Transgenic
age (years): 4.25
Sex: female
tissue: Blood
basename: 203203210022_R06C02
Treatment protocol Standard Illumina Protocol
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from sheepBloodHD841Transgenic
HD841
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147003 DNA methylation profiles from a transgenic sheep model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.609842762610324
cg00001209 0.852082344492774
cg00001364 0.9276840432427
cg00001582 0.0444162812812412
cg00002920 0.497889467302253
cg00003994 0.05221368856036
cg00004555 0.133878431736339
cg00005112 0.787448720719613
cg00005271 0.972358123900127
cg00006213 0.937679805726685
cg00008998 0.941681295837605
cg00009248 0.766753408572919
cg00009319 0.89736349938092
cg00010445 0.056514500999265
cg00010903 0.943652699443542
cg00010926 0.884975850559032
cg00010977 0.942686332864711
cg00012521 0.942232077152866
cg00012879 0.83658533807333
cg00013189 0.0738215534893524

Total number of rows: 37554

Table truncated, full table size 1066 Kbytes.




Supplementary file Size Download File type/resource
GSM4412060_203203210022_R06C02_Grn.idat.gz 384.7 Kb (ftp)(http) IDAT
GSM4412060_203203210022_R06C02_Red.idat.gz 382.2 Kb (ftp)(http) IDAT
Processed data included within Sample table

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