|
Status |
Public on Jul 02, 2020 |
Title |
genomic DNA methylation from sheepBloodHD1061Transgenic |
Sample type |
genomic |
|
|
Source name |
Transgenic_male_Blood
|
Organism |
Ovis aries |
Characteristics |
genotype huntington: Transgenic age (years): 2.916666667 Sex: male tissue: Blood basename: 203203210117_R04C02
|
Treatment protocol |
Standard Illumina Protocol
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted
|
Label |
cy3, cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
genomic DNA methylation from sheepBloodHD1061Transgenic HD1061
|
Data processing |
SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
|
|
|
Submission date |
Mar 15, 2020 |
Last update date |
Jul 04, 2020 |
Contact name |
Steve Horvath |
E-mail(s) |
shorvath@altoslabs.com
|
Organization name |
University of California, Los Angeles
|
Department |
Human Genetics
|
Lab |
Horvath
|
Street address |
695 Charles E. Young Drive South, Box 708822
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-7088 |
Country |
USA |
|
|
Platform ID |
GPL28271 |
Series (2) |
GSE147003 |
DNA methylation profiles from a transgenic sheep model of Huntington's disease |
GSE147004 |
DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species |
|