NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4412109 Query DataSets for GSM4412109
Status Public on Jul 02, 2020
Title genomic DNA methylation from sheepBloodHD1095Control
Sample type genomic
 
Source name Control_male_Blood
Organism Ovis aries
Characteristics genotype huntington: Control
age (years): 2.916666667
Sex: male
tissue: Blood
basename: 203203210169_R01C01
Treatment protocol Standard Illumina Protocol
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from sheepBloodHD1095Control
HD1095
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147003 DNA methylation profiles from a transgenic sheep model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.613717310087963
cg00001209 0.868956011557577
cg00001364 0.916419489117956
cg00001582 0.0435580039075146
cg00002920 0.516191393649649
cg00003994 0.0713162130778517
cg00004555 0.160667231804377
cg00005112 0.801037936649195
cg00005271 0.964690669151244
cg00006213 0.936426930162532
cg00008998 0.929902374644418
cg00009248 0.831934972368975
cg00009319 0.908560600261106
cg00010445 0.0504179623426139
cg00010903 0.929118495962943
cg00010926 0.940744089042487
cg00010977 0.935018603846016
cg00012521 0.939190294908217
cg00012879 0.856293160575674
cg00013189 0.144477992889569

Total number of rows: 37554

Table truncated, full table size 1065 Kbytes.




Supplementary file Size Download File type/resource
GSM4412109_203203210169_R01C01_Grn.idat.gz 381.5 Kb (ftp)(http) IDAT
GSM4412109_203203210169_R01C01_Red.idat.gz 377.9 Kb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap