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Sample GSM4412171 Query DataSets for GSM4412171
Status Public on Jul 02, 2020
Title genomic DNA methylation from sheepBloodHD921Control
Sample type genomic
 
Source name Control_male_Blood
Organism Ovis aries
Characteristics genotype huntington: Control
age (years): 3.9
Sex: male
tissue: Blood
basename: 203203210115_R03C01
Treatment protocol Standard Illumina Protocol
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from sheepBloodHD921Control
HD921
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147003 DNA methylation profiles from a transgenic sheep model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.592249459857075
cg00001209 0.857994493846055
cg00001364 0.922151475291585
cg00001582 0.0481410384278962
cg00002920 0.496253038708575
cg00003994 0.0447713691500021
cg00004555 0.116036397817754
cg00005112 0.787474868006746
cg00005271 0.964461405001118
cg00006213 0.924475131824405
cg00008998 0.947314516343146
cg00009248 0.794099531434445
cg00009319 0.900641775239712
cg00010445 0.056693472385307
cg00010903 0.954229024687834
cg00010926 0.92898271623494
cg00010977 0.916600464934264
cg00012521 0.931128466019366
cg00012879 0.830064739253368
cg00013189 0.125367840094124

Total number of rows: 37554

Table truncated, full table size 1066 Kbytes.




Supplementary file Size Download File type/resource
GSM4412171_203203210115_R03C01_Grn.idat.gz 384.6 Kb (ftp)(http) IDAT
GSM4412171_203203210115_R03C01_Red.idat.gz 382.4 Kb (ftp)(http) IDAT
Processed data included within Sample table

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