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Sample GSM4412175 Query DataSets for GSM4412175
Status Public on Jul 02, 2020
Title genomic DNA methylation from sheepBloodHD902Control
Sample type genomic
 
Source name Control_female_Blood
Organism Ovis aries
Characteristics genotype huntington: Control
age (years): 4
Sex: female
tissue: Blood
basename: 203203210115_R01C02
Treatment protocol Standard Illumina Protocol
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from sheepBloodHD902Control
HD902
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Mar 15, 2020
Last update date Jul 04, 2020
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (2)
GSE147003 DNA methylation profiles from a transgenic sheep model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.58861420659148
cg00001209 0.871168319800253
cg00001364 0.92428613200321
cg00001582 0.0442919228691912
cg00002920 0.511848403191694
cg00003994 0.0611134650738153
cg00004555 0.162625500392392
cg00005112 0.808737771809624
cg00005271 0.971591723498385
cg00006213 0.939354643377672
cg00008998 0.939503934406808
cg00009248 0.824213235894165
cg00009319 0.911042757647508
cg00010445 0.0513934390331237
cg00010903 0.943640895323351
cg00010926 0.894432451801751
cg00010977 0.939273397941484
cg00012521 0.929190794530231
cg00012879 0.834066773315092
cg00013189 0.0809846292885257

Total number of rows: 37554

Table truncated, full table size 1065 Kbytes.




Supplementary file Size Download File type/resource
GSM4412175_203203210115_R01C02_Grn.idat.gz 385.3 Kb (ftp)(http) IDAT
GSM4412175_203203210115_R01C02_Red.idat.gz 383.8 Kb (ftp)(http) IDAT
Processed data included within Sample table

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