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Status
Public on Mar 24, 2015
Title
Agilent-023795 Human DNA Methylation Microarray 244k (Probe Name Version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Human DNA Methylation Microarray 244k Arrays of this design have barcodes that begin with 16023795 or 2523795. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Mar 24, 2015
Last update date
Feb 13, 2021
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov
Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (200)
GSM1642430 , GSM1642431 , GSM1642432 , GSM1642433 , GSM1642434 , GSM1642435
GSM1642436 ,
GSM1642437 ,
GSM1642438 ,
GSM1642439 ,
GSM1642440 ,
GSM1642441 ,
GSM1642442 ,
GSM1642443 ,
GSM1642444 ,
GSM1986159 ,
GSM1986160 ,
GSM1986161 ,
GSM1986162 ,
GSM1986163 ,
GSM1986164 ,
GSM1986165 ,
GSM1986166 ,
GSM1986167 ,
GSM1986168 ,
GSM1986169 ,
GSM1986170 ,
GSM1986171 ,
GSM1986172 ,
GSM1986173 ,
GSM1986174 ,
GSM1986175 ,
GSM1986176 ,
GSM1986177 ,
GSM1986178 ,
GSM1986179 ,
GSM1986180 ,
GSM1986181 ,
GSM1986182 ,
GSM1986183 ,
GSM1986184 ,
GSM1986185 ,
GSM1986186 ,
GSM1986187 ,
GSM1986188 ,
GSM1986189 ,
GSM1986190 ,
GSM1986191 ,
GSM1986192 ,
GSM1986193 ,
GSM1986194 ,
GSM1986195 ,
GSM1986196 ,
GSM1986197 ,
GSM1986198 ,
GSM1986199 ,
GSM1986200 ,
GSM1986201 ,
GSM1986202 ,
GSM1986203 ,
GSM1986204 ,
GSM1986205 ,
GSM1986206 ,
GSM1986207 ,
GSM1986208 ,
GSM1986209 ,
GSM1986210 ,
GSM1986211 ,
GSM1986212 ,
GSM1986213 ,
GSM1986214 ,
GSM1986215 ,
GSM1986216 ,
GSM1986217 ,
GSM1986218 ,
GSM1986219 ,
GSM1986220 ,
GSM1986221 ,
GSM1986222 ,
GSM1986223 ,
GSM1986224 ,
GSM1986225 ,
GSM1986226 ,
GSM1986227 ,
GSM1986228 ,
GSM1986229 ,
GSM1986230 ,
GSM1986231 ,
GSM1986232 ,
GSM1986233 ,
GSM1986234 ,
GSM1986235 ,
GSM1986236 ,
GSM1986237 ,
GSM1986238 ,
GSM1986239 ,
GSM1986240 ,
GSM1986241 ,
GSM1986242 ,
GSM1986243 ,
GSM1986244 ,
GSM1986245 ,
GSM1986246 ,
GSM1986247 ,
GSM1986248 ,
GSM1986249 ,
GSM1986250 ,
GSM1986251 ,
GSM1986252 ,
GSM1986253 ,
GSM1986254 ,
GSM1986255 ,
GSM1986256 ,
GSM1986257 ,
GSM1986258 ,
GSM1986259 ,
GSM2362825 ,
GSM2362826 ,
GSM2362827 ,
GSM2362828 ,
GSM2362829 ,
GSM2362830 ,
GSM2362831 ,
GSM2362832 ,
GSM2362833 ,
GSM2362834 ,
GSM2362835 ,
GSM2362836 ,
GSM2362837 ,
GSM2362838 ,
GSM2362839 ,
GSM2362840 ,
GSM2362841 ,
GSM2362842 ,
GSM2532750 ,
GSM2532751 ,
GSM2532752 ,
GSM2532753 ,
GSM2532754 ,
GSM2532755 ,
GSM2532756 ,
GSM2532757 ,
GSM2532758 ,
GSM5081991 ,
GSM5081992 ,
GSM5081993 ,
GSM5081994 ,
GSM5081995 ,
GSM5081996 ,
GSM5081997 ,
GSM5081998 ,
GSM5081999 ,
GSM5082000 ,
GSM5082001 ,
GSM5082002 ,
GSM5082003 ,
GSM5082004 ,
GSM5082005 ,
GSM5082006 ,
GSM5082007 ,
GSM5082008 ,
GSM5082009 ,
GSM5082010 ,
GSM5082011 ,
GSM5082012 ,
GSM7496548 ,
GSM7496549 ,
GSM7496550 ,
GSM7496551 ,
GSM7496552 ,
GSM7496553 ,
GSM7496554 ,
GSM7496555 ,
GSM7496556 ,
GSM7496557 ,
GSM7496558 ,
GSM7496559 ,
GSM7496560 ,
GSM7496561 ,
GSM7496562 ,
GSM7496563 ,
GSM7496564 ,
GSM7496565 ,
GSM7496566 ,
GSM7496567 ,
GSM7496568 ,
GSM7496569 ,
GSM7496570 ,
GSM7496571 ,
GSM7496572 ,
GSM7496573 ,
GSM7496574 ,
GSM7496575 ,
GSM7496576 ,
GSM7496577 ,
GSM7496578 ,
GSM7496579 ,
GSM7496580 ,
GSM7496581 ,
GSM7496582
Series (6)
GSE67201
DNA methylation profiling of rhabdomyosarcoma tumor samples
GSE76401
Epigenomic study of Post-traumatic Stress Disorder among OIF/OEF veterans
GSE89243
DNA methylation profiling of prostate cancer
GSE96067
CpG methylation analysis in Mesial temporal lobe epilepsy and Focal cortical dysplasia patients
GSE166734
DNA methylation profile of cancerous and non-cancerous renal tissues
GSE235188
Genome-wide DNA methylation study in penile cancer
Relations
Alternative to
GPL10878
Data table header descriptions
ID
SEQUENCE
probe sequence
CONTROL_TYPE
Control type
GBACC
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
RANGE_GB
GenBank accession number LINK_PRE:http://www.ncbi.nlm.nih.gov/nuccore/?term=
RANGE_START
RANGE_END
SPOT_ID
Data table
ID
SEQUENCE
CONTROL_TYPE
GBACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
RANGE_GB
RANGE_START
RANGE_END
SPOT_ID
A_17_P00000077
TGGGATTCTGCTCAGCCCATTTCCTGGGCCACGGGATTCATGAAG
FALSE
NR_026874:10545
FLJ39609
similar to hCG1995469
ref|NR_026874:10545
chr1:844250-844294
hs|p36.33
DOWNSTREAM
NC_000001.10
844250
844294
A_17_P00000078
GTATATGCGGGGGTCGTTTGTGGTGTCATCACTGCTATCTTCCAG
FALSE
NR_026874:9531
FLJ39609
similar to hCG1995469
ref|NR_026874:9531
chr1:845264-845308
hs|p36.33
DOWNSTREAM
NC_000001.10
845264
845308
A_17_P00000079
CCTGGTCCCTGGAGCTGGGGTGGGAGTCGTGCTTTGATCAGTCAC
FALSE
NR_026874:9031
FLJ39609
similar to hCG1995469
ref|NR_026874:9031
chr1:845765-845809
hs|p36.33
DOWNSTREAM
NC_000001.10
845765
845809
A_17_P00000131
CTCATCGGGCCTGTTACGCACGTTCTGGTCTCTCCGTGCCCACAG
FALSE
NR_026874:5
FLJ39609
similar to hCG1995469
ref|NR_026874:5|ref|NM_152486:-6308
chr1:854790-854834
hs|p36.33
INSIDE
NC_000001.10
854790
854834
A_17_P00000133
GAGGCCGTCACACAGCACCTGTGCTGAGAGTGAGCTGACGTGGAC
FALSE
NR_026874:-117
FLJ39609
similar to hCG1995469
ref|NR_026874:-117|ref|NM_152486:-6186
chr1:854913-854957
hs|p36.33
DIVERGENT_PROMOTER
NC_000001.10
854913
854957
A_17_P00000171
CTGTTATTCACAGAACACTTTGCCCAGGCAACACACTACAAATCCACAAC
FALSE
NM_152486:-2207
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:-2207|ref|NR_026874:-4096
chr1:858889-858938
hs|p36.33
DIVERGENT_PROMOTER
NC_000001.10
858889
858938
A_17_P00000172
AGTCCTGGATTCCAGCCGCTCGCAGTGACTCGGTACTCGGGATAG
FALSE
NM_152486:-1974
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:-1974|ref|NR_026874:-4329
chr1:859125-859169
hs|p36.33
DIVERGENT_PROMOTER
NC_000001.10
859125
859169
A_17_P00000173
GCGAGACGGCCAAGGACTGGAAGCGCAGCATCCGCCACAAAGGTG
FALSE
NM_152486:-812
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:-812|ref|NR_026874:-5491
chr1:860287-860331
hs|p36.33
DIVERGENT_PROMOTER
NC_000001.10
860287
860331
A_17_P00000174
GTCTCTGCGAGGCTCCTGGGCCTTAAGGCCCGAAGGAAGTTTACG
FALSE
NM_152486:-528
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:-528|ref|NR_026874:-5775
chr1:860570-860614
hs|p36.33
DIVERGENT_PROMOTER
NC_000001.10
860570
860614
A_17_P00000175
AAAAGTCTGAAGACGCTTATGTCCAAGGGGATCCTGCAGGTGCAT
FALSE
NM_152486:206
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:206|ref|NR_026874:-6509
chr1:861304-861348
hs|p36.33
INSIDE
NC_000001.10
861304
861348
A_17_P00000176
CTGGGAGTTACTCTCCCCTGCGGAGCTTGTCCCTGCGGTTTTCAG
FALSE
NM_152486:320
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:320|ref|NR_026874:-6623
chr1:861418-861462
hs|p36.33
INSIDE
NC_000001.10
861418
861462
A_17_P00000239
AGCTATTTAACGAGGTTTAGGGTAGGCTCCTAGGTCACTGCGCAG
FALSE
NM_152486:8194
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:8194
chr1:869293-869337
hs|p36.33
INSIDE
NC_000001.10
869293
869337
A_17_P00000240
GACCCTGAGCCCCTTCTCTGCTGACTGGGGAGAGGCTCACGGAAC
FALSE
NM_152486:9282
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:9282|ref|NM_015658:24277
chr1:870380-870424
hs|p36.33
INSIDE
NC_000001.10
870380
870424
A_17_P00000242
CTTTGAGGCAGGGAGTGAGATAACTGTGATTCCCTGTGGAGGGCG
FALSE
NM_152486:9730
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:9730|ref|NM_015658:23829
chr1:870829-870873
hs|p36.33
INSIDE
NC_000001.10
870829
870873
A_17_P00000243
AACGTGGCACTCAGAGGTCATCCCCACGCTCACACACAGAGCTAG
FALSE
NM_152486:9932
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:9932|ref|NM_015658:23627
chr1:871031-871075
hs|p36.33
INSIDE
NC_000001.10
871031
871075
A_17_P00000244
GAGCATCAGAGCCGCTGTGAATTCCAGAGAGGCAGCCTGGAGATT
FALSE
NM_152486:10118
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:10118|ref|NM_015658:23441
chr1:871216-871260
hs|p36.33
INSIDE
NC_000001.10
871216
871260
A_17_P00000272
AAGCTTTGGCCAGCCGCGTCTACTATGGGGACCTCAGATTTTCTT
FALSE
NM_152486:14992
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:14992|ref|NM_015658:18567
chr1:876091-876135
hs|p36.33
INSIDE
NC_000001.10
876091
876135
A_17_P00000273
AAGAGCTTTTCCCGACACTTCCTCGCCCAGCATCTTGTCTGCCGT
FALSE
NM_152486:15210
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:15210|ref|NM_015658:18349
chr1:876308-876352
hs|p36.33
INSIDE
NC_000001.10
876308
876352
A_17_P00000274
CGAGTGGTGTGGTCAGTTCCCCACCTCAGTGTTCTACGCCAGGAC
FALSE
NM_152486:15320
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:15320|ref|NM_015658:18239
chr1:876418-876462
hs|p36.33
INSIDE
NC_000001.10
876418
876462
A_17_P00000275
ATCACTGCTGTTGTCCCCCACCCAGATCTCCTGAGGGTCCGGCAG
FALSE
NM_152486:15400
SAMD11
sterile alpha motif domain containing 11
ref|NM_152486:15400|ref|NM_015658:18159
chr1:876499-876543
hs|p36.33
INSIDE
NC_000001.10
876499
876543
Total number of rows: 240952 Table truncated, full table size 51380 Kbytes .
Supplementary data files not provided