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Platform GPL19930 Query DataSets for GPL19930
Status Public on Mar 24, 2015
Title Agilent-023795 Human DNA Methylation Microarray 244k (Probe Name Version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Human DNA Methylation Microarray 244k

Arrays of this design have barcodes that begin with 16023795 or 2523795.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Mar 24, 2015
Last update date Feb 13, 2021
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (200) GSM1642430, GSM1642431, GSM1642432, GSM1642433, GSM1642434, GSM1642435 
Series (6)
GSE67201 DNA methylation profiling of rhabdomyosarcoma tumor samples
GSE76401 Epigenomic study of Post-traumatic Stress Disorder among OIF/OEF veterans
GSE89243 DNA methylation profiling of prostate cancer
Relations
Alternative to GPL10878

Data table header descriptions
ID
SEQUENCE probe sequence
CONTROL_TYPE Control type
GBACC
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
RANGE_GB GenBank accession number LINK_PRE:http://www.ncbi.nlm.nih.gov/nuccore/?term=
RANGE_START
RANGE_END
SPOT_ID

Data table
ID SEQUENCE CONTROL_TYPE GBACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION RANGE_GB RANGE_START RANGE_END SPOT_ID
A_17_P00000077 TGGGATTCTGCTCAGCCCATTTCCTGGGCCACGGGATTCATGAAG FALSE NR_026874:10545 FLJ39609 similar to hCG1995469 ref|NR_026874:10545 chr1:844250-844294 hs|p36.33 DOWNSTREAM NC_000001.10 844250 844294
A_17_P00000078 GTATATGCGGGGGTCGTTTGTGGTGTCATCACTGCTATCTTCCAG FALSE NR_026874:9531 FLJ39609 similar to hCG1995469 ref|NR_026874:9531 chr1:845264-845308 hs|p36.33 DOWNSTREAM NC_000001.10 845264 845308
A_17_P00000079 CCTGGTCCCTGGAGCTGGGGTGGGAGTCGTGCTTTGATCAGTCAC FALSE NR_026874:9031 FLJ39609 similar to hCG1995469 ref|NR_026874:9031 chr1:845765-845809 hs|p36.33 DOWNSTREAM NC_000001.10 845765 845809
A_17_P00000131 CTCATCGGGCCTGTTACGCACGTTCTGGTCTCTCCGTGCCCACAG FALSE NR_026874:5 FLJ39609 similar to hCG1995469 ref|NR_026874:5|ref|NM_152486:-6308 chr1:854790-854834 hs|p36.33 INSIDE NC_000001.10 854790 854834
A_17_P00000133 GAGGCCGTCACACAGCACCTGTGCTGAGAGTGAGCTGACGTGGAC FALSE NR_026874:-117 FLJ39609 similar to hCG1995469 ref|NR_026874:-117|ref|NM_152486:-6186 chr1:854913-854957 hs|p36.33 DIVERGENT_PROMOTER NC_000001.10 854913 854957
A_17_P00000171 CTGTTATTCACAGAACACTTTGCCCAGGCAACACACTACAAATCCACAAC FALSE NM_152486:-2207 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:-2207|ref|NR_026874:-4096 chr1:858889-858938 hs|p36.33 DIVERGENT_PROMOTER NC_000001.10 858889 858938
A_17_P00000172 AGTCCTGGATTCCAGCCGCTCGCAGTGACTCGGTACTCGGGATAG FALSE NM_152486:-1974 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:-1974|ref|NR_026874:-4329 chr1:859125-859169 hs|p36.33 DIVERGENT_PROMOTER NC_000001.10 859125 859169
A_17_P00000173 GCGAGACGGCCAAGGACTGGAAGCGCAGCATCCGCCACAAAGGTG FALSE NM_152486:-812 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:-812|ref|NR_026874:-5491 chr1:860287-860331 hs|p36.33 DIVERGENT_PROMOTER NC_000001.10 860287 860331
A_17_P00000174 GTCTCTGCGAGGCTCCTGGGCCTTAAGGCCCGAAGGAAGTTTACG FALSE NM_152486:-528 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:-528|ref|NR_026874:-5775 chr1:860570-860614 hs|p36.33 DIVERGENT_PROMOTER NC_000001.10 860570 860614
A_17_P00000175 AAAAGTCTGAAGACGCTTATGTCCAAGGGGATCCTGCAGGTGCAT FALSE NM_152486:206 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:206|ref|NR_026874:-6509 chr1:861304-861348 hs|p36.33 INSIDE NC_000001.10 861304 861348
A_17_P00000176 CTGGGAGTTACTCTCCCCTGCGGAGCTTGTCCCTGCGGTTTTCAG FALSE NM_152486:320 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:320|ref|NR_026874:-6623 chr1:861418-861462 hs|p36.33 INSIDE NC_000001.10 861418 861462
A_17_P00000239 AGCTATTTAACGAGGTTTAGGGTAGGCTCCTAGGTCACTGCGCAG FALSE NM_152486:8194 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:8194 chr1:869293-869337 hs|p36.33 INSIDE NC_000001.10 869293 869337
A_17_P00000240 GACCCTGAGCCCCTTCTCTGCTGACTGGGGAGAGGCTCACGGAAC FALSE NM_152486:9282 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:9282|ref|NM_015658:24277 chr1:870380-870424 hs|p36.33 INSIDE NC_000001.10 870380 870424
A_17_P00000242 CTTTGAGGCAGGGAGTGAGATAACTGTGATTCCCTGTGGAGGGCG FALSE NM_152486:9730 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:9730|ref|NM_015658:23829 chr1:870829-870873 hs|p36.33 INSIDE NC_000001.10 870829 870873
A_17_P00000243 AACGTGGCACTCAGAGGTCATCCCCACGCTCACACACAGAGCTAG FALSE NM_152486:9932 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:9932|ref|NM_015658:23627 chr1:871031-871075 hs|p36.33 INSIDE NC_000001.10 871031 871075
A_17_P00000244 GAGCATCAGAGCCGCTGTGAATTCCAGAGAGGCAGCCTGGAGATT FALSE NM_152486:10118 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:10118|ref|NM_015658:23441 chr1:871216-871260 hs|p36.33 INSIDE NC_000001.10 871216 871260
A_17_P00000272 AAGCTTTGGCCAGCCGCGTCTACTATGGGGACCTCAGATTTTCTT FALSE NM_152486:14992 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:14992|ref|NM_015658:18567 chr1:876091-876135 hs|p36.33 INSIDE NC_000001.10 876091 876135
A_17_P00000273 AAGAGCTTTTCCCGACACTTCCTCGCCCAGCATCTTGTCTGCCGT FALSE NM_152486:15210 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:15210|ref|NM_015658:18349 chr1:876308-876352 hs|p36.33 INSIDE NC_000001.10 876308 876352
A_17_P00000274 CGAGTGGTGTGGTCAGTTCCCCACCTCAGTGTTCTACGCCAGGAC FALSE NM_152486:15320 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:15320|ref|NM_015658:18239 chr1:876418-876462 hs|p36.33 INSIDE NC_000001.10 876418 876462
A_17_P00000275 ATCACTGCTGTTGTCCCCCACCCAGATCTCCTGAGGGTCCGGCAG FALSE NM_152486:15400 SAMD11 sterile alpha motif domain containing 11 ref|NM_152486:15400|ref|NM_015658:18159 chr1:876499-876543 hs|p36.33 INSIDE NC_000001.10 876499 876543

Total number of rows: 240952

Table truncated, full table size 51380 Kbytes.




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