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Status |
Public on Nov 28, 2023 |
Title |
Decoding the gene regulatory network of endosperm differentiation in maize |
Organism |
Zea mays |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
38167709 |
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Submission date |
Apr 27, 2022 |
Last update date |
Jan 04, 2024 |
Contact name |
Qiang Huo |
E-mail(s) |
huoqiang@cau.edu.cn
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Organization name |
China Agricultural University
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Street address |
Yuanmingyuan West Road
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City |
Beijing |
ZIP/Postal code |
100091 |
Country |
China |
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Platforms (1) |
GPL25410 |
Illumina NovaSeq 6000 (Zea mays) |
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Samples (196)
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GSM6068949 |
7DAP endosperm, replicate 3, scRNAseq |
GSM6069324 |
B73 6DAP no-protoplasts endosperm |
GSM6069325 |
B73 7DAP no-protoplasts endosperm |
GSM6069327 |
B73 6DAP protoplasts endosperm |
GSM6069328 |
B73 7DAP protoplasts endosperm |
GSM6069330 |
B73 6DAP endosperm, replicate 1 |
GSM6069331 |
B73 6DAP endosperm, replicate 2 |
GSM6069332 |
B73 6DAP endosperm, replicate 3 |
GSM6069333 |
B73 7DAP endosperm, replicate 1 |
GSM6069334 |
B73 7DAP endosperm, replicate 2 |
GSM6069335 |
B73 7DAP endosperm, replicate 3 |
GSM6069708 |
EREB209 |
GSM6069709 |
WRKY92 |
GSM6069710 |
EREB54 |
GSM6069711 |
EREB111 |
GSM6069712 |
MYBR81 |
GSM6069713 |
EREB147 |
GSM6069714 |
NACTF109 |
GSM6069715 |
WRKY48 |
GSM6069716 |
NACTF38 |
GSM6069717 |
NACTF49 |
GSM6069718 |
BZIP8 |
GSM6069719 |
EREB108 |
GSM6069720 |
MYB73 |
GSM6069721 |
OCL1 |
GSM6069722 |
BZIP104 |
GSM6069724 |
NACTF5 |
GSM6069725 |
NACTF77 |
GSM6069726 |
BZIP60 |
GSM6069727 |
WRKY93 |
GSM6069728 |
BZR1 |
GSM6069729 |
NACTF66 |
GSM6069730 |
DOF36 |
GSM6069731 |
HB118 |
GSM6069732 |
NACTF61 |
GSM6069733 |
HSFTF21 |
GSM6069734 |
MRP1 |
GSM6069735 |
WRKY105 |
GSM6069736 |
MYBR29 |
GSM6069737 |
WRKY67 |
GSM6069738 |
EREB79 |
GSM6069739 |
MYBR33 |
GSM6069740 |
WRKY2 |
GSM6069742 |
WRKY47 |
GSM6069743 |
C3H11 |
GSM6069745 |
EREB118 |
GSM6069747 |
WRKY8 |
GSM6069748 |
EREB200 |
GSM6069749 |
WRKY50 |
GSM6069750 |
NACTF6 |
GSM6069751 |
WRKY94 |
GSM6069752 |
GATA24 |
GSM6069753 |
HB96 |
GSM6069754 |
1d042933 |
GSM6069755 |
WRKY14 |
GSM6069757 |
SFB1 |
GSM6069758 |
1d012968 |
GSM6069760 |
ZIM34 |
GSM6069761 |
ZIM10 |
GSM6069762 |
THX47 |
GSM6069763 |
BZIP78 |
GSM6069764 |
OCL5A |
GSM6069765 |
HB91 |
GSM6069766 |
BZIP114 |
GSM6069767 |
BZIP43 |
GSM6069768 |
GBF1 |
GSM6069769 |
MYB50 |
GSM6069770 |
BZIP52 |
GSM6069771 |
NRP1 |
GSM6069772 |
EREB97 |
GSM6069773 |
WRKY1 |
GSM6069774 |
WRKY37 |
GSM6069775 |
1d012427 |
GSM6069776 |
CPP10 |
GSM6069777 |
DBF1 |
GSM6069778 |
EREB196 |
GSM6069779 |
NACTF126 |
GSM6069780 |
BZIP54 |
GSM6069781 |
EREB205 |
GSM6069782 |
AY110782 |
GSM6069783 |
GLK44 |
GSM6069784 |
WRKY72 |
GSM6069785 |
WRKY32 |
GSM6069786 |
SMH1 |
GSM6069787 |
NACTF2 |
GSM6069788 |
BZIP75 |
GSM6069789 |
BZIP111 |
GSM6069790 |
NACTF65 |
GSM6069791 |
EREB2 |
GSM6069792 |
NACTF29 |
GSM6069793 |
NACTF11 |
GSM6069794 |
WRKY71 |
GSM6069795 |
WRKY79 |
GSM6069796 |
GATA25 |
GSM6069797 |
EREB150 |
GSM6069798 |
NKD2 |
GSM6069799 |
MYB83 |
GSM6069800 |
WRKY122 |
GSM6069801 |
HSFTF16 |
GSM6069802 |
MYBR86 |
GSM6069803 |
ZmOrphan110 |
GSM6069804 |
MADS53 |
GSM6069805 |
BZIP23 |
GSM6069806 |
EREB102 |
GSM6069807 |
MYBR111 |
GSM6069808 |
PBF1 |
GSM6069809 |
NACTF134 |
GSM6069810 |
NKD1 |
GSM6069811 |
WRKY102 |
GSM6069812 |
WRKY123 |
GSM6069814 |
TCPTF40 |
GSM6069815 |
MYBR19 |
GSM6069816 |
ABI33 |
GSM6069817 |
MYB155 |
GSM6069818 |
EREB211 |
GSM6069820 |
EREB18 |
GSM6069821 |
MYBR98 |
GSM6069823 |
NACTF67 |
GSM6069824 |
EREB65 |
GSM6069825 |
MYB121 |
GSM6069826 |
ZAG2 |
GSM6069827 |
HSFTF17 |
GSM6069829 |
MYBR13 |
GSM6069830 |
BZIP22 |
GSM6069831 |
BHLH156 |
GSM6069832 |
BZIP121 |
GSM7181615 |
Wild type ZmMYBR19, replicate 1 |
GSM7181616 |
Wild type ZmMYBR19, replicate 2 |
GSM7181617 |
Wild type ZmMYBR19, replicate 3 |
GSM7181618 |
Mutant ZmMYBR19, replicate 1 |
GSM7181619 |
Mutant ZmMYBR19, replicate 2 |
GSM7181620 |
Mutant ZmMYBR19, replicate 3 |
GSM7181621 |
Wild type ZmMYBR29, replicate 1 |
GSM7181622 |
Wild type ZmMYBR29, replicate 2 |
GSM7181623 |
Wild type ZmMYBR29, replicate 3 |
GSM7181624 |
Mutant ZmMYBR29, replicate 1 |
GSM7181625 |
Mutant ZmMYBR29, replicate 2 |
GSM7181626 |
Mutant ZmMYBR29, replicate 3 |
GSM7181627 |
Wild type ZmEREB108, replicate 1 |
GSM7181628 |
Wild type ZmEREB108, replicate 2 |
GSM7181629 |
Wild type ZmEREB108, replicate 3 |
GSM7181630 |
Mutant ZmEREB108, replicate 1 |
GSM7181631 |
Mutant ZmEREB108, replicate 2 |
GSM7181632 |
Mutant ZmEREB108, replicate 3 |
GSM7181679 |
O2 |
GSM7181680 |
EREB83 |
GSM7181681 |
EREB195 |
GSM7181682 |
EREB109 |
GSM7181683 |
EREB190 |
GSM7181684 |
EREB72 |
GSM7181685 |
EREB19 |
GSM7181686 |
BHLH164 |
GSM7181687 |
MYC7 |
GSM7181688 |
BZIP14 |
GSM7181689 |
BZIP58 |
GSM7181690 |
BZIP92 |
GSM7181691 |
BZIP10 |
GSM7181692 |
BZIP49 |
GSM7181693 |
OHP1 |
GSM7181694 |
BZIP125 |
GSM7181695 |
BZIP3 |
GSM7181696 |
BZIP48 |
GSM7181697 |
BZIP102 |
GSM7181698 |
BZIP71 |
GSM7181699 |
YY1 |
GSM7181700 |
DOF47 |
GSM7181701 |
HB98 |
GSM7181702 |
HB45 |
GSM7181703 |
HB49 |
GSM7181704 |
WOX13A |
GSM7181705 |
HSFTF5 |
GSM7181706 |
TU1 |
GSM7181707 |
MYB35 |
GSM7181708 |
MYBR21 |
GSM7181709 |
MYBR26 |
GSM7181710 |
MYBR43 |
GSM7181711 |
MYBR32 |
GSM7181712 |
MYBR77 |
GSM7181713 |
MYB127 |
GSM7181714 |
MYB32 |
GSM7181715 |
NACTF110 |
GSM7181716 |
THX35 |
GSM7181717 |
NACTF23 |
GSM7181718 |
NACTF32 |
GSM7181719 |
EREB148 |
GSM7181720 |
NACTF4 |
GSM7181721 |
WRKY53 |
GSM7181722 |
HSFTF20 |
GSM7181723 |
1d030858 |
GSM7181724 |
EREB84 |
GSM7181725 |
pUC57-Halo, repeat 1 |
GSM7181726 |
pUC57-Halo, repeat 2 |
GSM7181727 |
pUC57-Halo, repeat 3 |
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This SuperSeries is composed of the following SubSeries:
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GSE201640 |
Decoding the gene regulatory network of endosperm differentiation in maize [scRNA-seq] |
GSE201671 |
Decoding the gene regulatory network of endosperm differentiation in maize [RNA-seq] |
GSE201700 |
Decoding the gene regulatory network of endosperm differentiation in maize [DAP-seq] |
GSE229942 |
Decoding the gene regulatory network of endosperm differentiation in maize [MP3RNA-seq] |
GSE229946 |
Decoding the gene regulatory network of endosperm differentiation in maize [DAP-seq] |
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Relations |
BioProject |
PRJNA832700 |
Supplementary file |
Size |
Download |
File type/resource |
GSE201701_RAW.tar |
6.3 Gb |
(http)(custom) |
TAR (of BED, BW, MTX, NARROWPEAK, TSV, TXT) |
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