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| Status |
Public on Oct 25, 2007 |
| Title |
Comparative gene expression analysis between virus-susceptible and -resistant rice lines (TW16-1263 and -1029) |
| Platform organism |
Oryza sativa Japonica Group |
| Sample organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
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| Summary |
Near-isogenic lines TW16-1263 and TW16-1029 were developed from the cross between TN1 (recurrent parent susceptible to rice tungro spherical virus (RTSV)) and Utri Merah (donor parent resistant to RTSV). TW16-1263 is susceptible to RTSV, whereas TW16-1029 is resistant to RTSV. In order to identify genes which are constitutively differentially expressed between TW16-1263 and TW16-1029, the gene expression in the two lines were compared at three different conditions (healthy, green leafhopper (GLH)-inoculated, and RTSV-inoculated).
Keywords: Constitutive differential expression
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| Overall design |
Total RNA was isolated from 14-day old plants of TW16-1263 and TW16-1029 at three different conditions (healthy, GLH-inoculated, and RTSV-inoculated). The levels of gene expression in the two lines of the same condition were compared by microarray. Each experiment was repeated twice.
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| Contributor(s) |
Satoh K, DeLeon T, Kwak D |
| Citation missing |
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| |
| Submission date |
Oct 25, 2006 |
| Last update date |
Dec 06, 2012 |
| Contact name |
IL-RYONG CHOI |
| E-mail(s) |
ichoi@cgiar.org
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| Organization name |
International Rice Research Institute
|
| Street address |
DAPO Box 7777
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| City |
Metro Manila |
| ZIP/Postal code |
0000 |
| Country |
Philippines |
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| Platforms (1) |
| GPL892 |
Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA97623 |
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