GEO help: Mouse over screen elements for information.
Status
Public on Oct 15, 2015
Title
Agilent-067406 Human CBC lncRNA + mRNA microarray V4.0 (Probe name version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent
Manufacture protocol
Manufacture protocol to see manufacturer's website
Submission date
Apr 28, 2015
Last update date
May 09, 2016
Contact name
Hao Li
E-mail(s)
handanlihao-1@163.com Organization name
Beijing Tiantan Hospital, Capital Medical University
Department
Department of Neurosurgery
Street address
No.6 Tiantanxili
City
Beijing
ZIP/Postal code
100050
Country
China
Samples (576)
GSM1668846 , GSM1668847 , GSM1668848 , GSM1668849 , GSM1908728 , GSM1908729
GSM1908730 ,
GSM1908731 ,
GSM1908732 ,
GSM1908733 ,
GSM1981353 ,
GSM1981354 ,
GSM1981355 ,
GSM1981356 ,
GSM1981357 ,
GSM1981358 ,
GSM1981359 ,
GSM2078148 ,
GSM2078149 ,
GSM2078150 ,
GSM2133632 ,
GSM2133633 ,
GSM2133634 ,
GSM2133635 ,
GSM2133636 ,
GSM2133637 ,
GSM2285426 ,
GSM2285427 ,
GSM2285428 ,
GSM2285429 ,
GSM2285430 ,
GSM2285431 ,
GSM2285432 ,
GSM2285433 ,
GSM2285434 ,
GSM2285435 ,
GSM2285436 ,
GSM2285437 ,
GSM2285438 ,
GSM2285439 ,
GSM2285440 ,
GSM2285441 ,
GSM2305279 ,
GSM2305280 ,
GSM2305281 ,
GSM2305282 ,
GSM2305283 ,
GSM2305284 ,
GSM2305285 ,
GSM2305286 ,
GSM2305287 ,
GSM2305288 ,
GSM2305289 ,
GSM2305290 ,
GSM2349014 ,
GSM2349015 ,
GSM2349016 ,
GSM2349017 ,
GSM2349018 ,
GSM2411629 ,
GSM2411630 ,
GSM2411631 ,
GSM2411632 ,
GSM2411633 ,
GSM2411634 ,
GSM2411635 ,
GSM2411636 ,
GSM2411637 ,
GSM2411638 ,
GSM2462036 ,
GSM2462037 ,
GSM2464505 ,
GSM2464506 ,
GSM2464507 ,
GSM2464508 ,
GSM2464509 ,
GSM2464510 ,
GSM2464511 ,
GSM2464512 ,
GSM2464513 ,
GSM2464514 ,
GSM2464515 ,
GSM2464516 ,
GSM2464517 ,
GSM2464518 ,
GSM2464519 ,
GSM2464520 ,
GSM2464521 ,
GSM2464522 ,
GSM2465066 ,
GSM2465067 ,
GSM2465068 ,
GSM2477389 ,
GSM2477390 ,
GSM2477391 ,
GSM2477392 ,
GSM2477393 ,
GSM2477394 ,
GSM2550581 ,
GSM2550582 ,
GSM2550583 ,
GSM2550584 ,
GSM2550585 ,
GSM2550586 ,
GSM2550587 ,
GSM2577174 ,
GSM2577175 ,
GSM2577176 ,
GSM2577177 ,
GSM2577178 ,
GSM2577179 ,
GSM2642797 ,
GSM2642798 ,
GSM2642799 ,
GSM2642800 ,
GSM2642801 ,
GSM2642802 ,
GSM2741533 ,
GSM2741534 ,
GSM2741535 ,
GSM2741536 ,
GSM2746143 ,
GSM2746144 ,
GSM2746145 ,
GSM2746146 ,
GSM2863101 ,
GSM2863102 ,
GSM2863103 ,
GSM2863104 ,
GSM2863105 ,
GSM2863106 ,
GSM2863107 ,
GSM2863108 ,
GSM2863109 ,
GSM2863110 ,
GSM3034361 ,
GSM3034362 ,
GSM3034363 ,
GSM3034364 ,
GSM3034365 ,
GSM3034366 ,
GSM3095926 ,
GSM3095927 ,
GSM3095928 ,
GSM3095929 ,
GSM3095930 ,
GSM3095931 ,
GSM3095932 ,
GSM3095933 ,
GSM3095934 ,
GSM3095935 ,
GSM3095936 ,
GSM3095937 ,
GSM3095938 ,
GSM3095939 ,
GSM3095940 ,
GSM3095941 ,
GSM3095942 ,
GSM3095943 ,
GSM3095944 ,
GSM3095945 ,
GSM3095946 ,
GSM3095947 ,
GSM3095948 ,
GSM3095949 ,
GSM3095950 ,
GSM3095951 ,
GSM3095952 ,
GSM3095953 ,
GSM3095954 ,
GSM3095955 ,
GSM3095956 ,
GSM3095957 ,
GSM3095958 ,
GSM3095959 ,
GSM3095960 ,
GSM3095961 ,
GSM3095962 ,
GSM3095963 ,
GSM3095964 ,
GSM3095965 ,
GSM3095966 ,
GSM3095967 ,
GSM3095968 ,
GSM3095969 ,
GSM3095970 ,
GSM3095971 ,
GSM3095972 ,
GSM3095973 ,
GSM3095974 ,
GSM3095975 ,
GSM3095976 ,
GSM3095977 ,
GSM3095978 ,
GSM3095979 ,
GSM3095980 ,
GSM3095981 ,
GSM3095982 ,
GSM3095983 ,
GSM3095984 ,
GSM3095985 ,
GSM3095986 ,
GSM3095987 ,
GSM3095988 ,
GSM3095989 ,
GSM3095990 ,
GSM3095991 ,
GSM3095992 ,
GSM3095993 ,
GSM3095994 ,
GSM3095995 ,
GSM3095996 ,
GSM3095997 ,
GSM3095998 ,
GSM3095999 ,
GSM3096000 ,
GSM3096001 ,
GSM3096002 ,
GSM3096003 ,
GSM3096004 ,
GSM3096005 ,
GSM3096006 ,
GSM3096007 ,
GSM3096008 ,
GSM3096009 ,
GSM3096010 ,
GSM3096011 ,
GSM3096012 ,
GSM3096013 ,
GSM3096014 ,
GSM3096015 ,
GSM3096016 ,
GSM3096017 ,
GSM3096018 ,
GSM3096019 ,
GSM3096020 ,
GSM3096021 ,
GSM3096022 ,
GSM3096023 ,
GSM3096024 ,
GSM3096025 ,
GSM3096026 ,
GSM3096027 ,
GSM3096028 ,
GSM3096029 ,
GSM3096030 ,
GSM3096031 ,
GSM3096032 ,
GSM3096033 ,
GSM3096034 ,
GSM3096035 ,
GSM3096036 ,
GSM3096037 ,
GSM3096038 ,
GSM3096039 ,
GSM3096040 ,
GSM3096041 ,
GSM3096042 ,
GSM3096043 ,
GSM3096044 ,
GSM3096045 ,
GSM3096046 ,
GSM3096047 ,
GSM3096048 ,
GSM3096049 ,
GSM3096050 ,
GSM3096051 ,
GSM3096052 ,
GSM3096053 ,
GSM3096054 ,
GSM3096055 ,
GSM3096056 ,
GSM3096057 ,
GSM3096058 ,
GSM3096059 ,
GSM3096060 ,
GSM3096061 ,
GSM3096062 ,
GSM3096063 ,
GSM3096064 ,
GSM3096065 ,
GSM3096066 ,
GSM3163056 ,
GSM3163057 ,
GSM3163058 ,
GSM3163059 ,
GSM3163060 ,
GSM3163061 ,
GSM3163062 ,
GSM3163063 ,
GSM3163064 ,
GSM3163065 ,
GSM3163066 ,
GSM3163067 ,
GSM3163068 ,
GSM3163069 ,
GSM3163070 ,
GSM3163071 ,
GSM3163072 ,
GSM3163073 ,
GSM3163074 ,
GSM3163075 ,
GSM3163076 ,
GSM3163077 ,
GSM3163078 ,
GSM3163079 ,
GSM3267245 ,
GSM3267246 ,
GSM3267247 ,
GSM3267248 ,
GSM3267249 ,
GSM3267250 ,
GSM3267251 ,
GSM3267252 ,
GSM3267253 ,
GSM3267254 ,
GSM3425895 ,
GSM3425896 ,
GSM3425897 ,
GSM3454777 ,
GSM3454778 ,
GSM3454779 ,
GSM3454780 ,
GSM3454781 ,
GSM3454782 ,
GSM3454783 ,
GSM3454784 ,
GSM3454785 ,
GSM3466358 ,
GSM3466359 ,
GSM3466360 ,
GSM3516986 ,
GSM3516987 ,
GSM3516988 ,
GSM3516989 ,
GSM3516990 ,
GSM3516991 ,
GSM3516992 ,
GSM3516993 ,
GSM3516994 ,
GSM3516995 ,
GSM3516996 ,
GSM3516997 ,
GSM3692255 ,
GSM3692256 ,
GSM3692257 ,
GSM3692258 ,
GSM3692259 ,
GSM3692260 ,
GSM3692261 ,
GSM3692262 ,
GSM3692263 ,
GSM3734109 ,
GSM3734110 ,
GSM3734111 ,
GSM3734112 ,
GSM3734113 ,
GSM3734114 ,
GSM3734115 ,
GSM3734116 ,
GSM3734117 ,
GSM3734118 ,
GSM3734119 ,
GSM3734120 ,
GSM3753429 ,
GSM3753430 ,
GSM3753431 ,
GSM3753432 ,
GSM3753433 ,
GSM3753434 ,
GSM3753435 ,
GSM3753436 ,
GSM3753437 ,
GSM3753438 ,
GSM3753439 ,
GSM3753440 ,
GSM3753441 ,
GSM3753442 ,
GSM3753443 ,
GSM3753444 ,
GSM3933487 ,
GSM3933488 ,
GSM3933489 ,
GSM3933490 ,
GSM3933491 ,
GSM3933492 ,
GSM3972637 ,
GSM3972638 ,
GSM3972639 ,
GSM3972640 ,
GSM3972641 ,
GSM3972642 ,
GSM3972643 ,
GSM3972644 ,
GSM3972645 ,
GSM3972646 ,
GSM4080083 ,
GSM4080084 ,
GSM4330114 ,
GSM4330116 ,
GSM4330118 ,
GSM4330119 ,
GSM4330121 ,
GSM4330123 ,
GSM4368444 ,
GSM4368445 ,
GSM4368446 ,
GSM4368447 ,
GSM4368448 ,
GSM4368449 ,
GSM4368450 ,
GSM4368451 ,
GSM4368452 ,
GSM4386231 ,
GSM4386232 ,
GSM4386233 ,
GSM4386234 ,
GSM4386235 ,
GSM4386236 ,
GSM4386237 ,
GSM4386238 ,
GSM4386239 ,
GSM4386240 ,
GSM4386241 ,
GSM4429835 ,
GSM4429836 ,
GSM4429837 ,
GSM4429838 ,
GSM4655049 ,
GSM4655050 ,
GSM4655051 ,
GSM4655052 ,
GSM4655053 ,
GSM4655054 ,
GSM4760971 ,
GSM4760972 ,
GSM4760973 ,
GSM4760974 ,
GSM4760975 ,
GSM4775266 ,
GSM4775267 ,
GSM4775268 ,
GSM4775269 ,
GSM4775270 ,
GSM4775271 ,
GSM4775272 ,
GSM4775273 ,
GSM4775274 ,
GSM4775275 ,
GSM4801971 ,
GSM4801972 ,
GSM4801973 ,
GSM4801974 ,
GSM4801975 ,
GSM4801976 ,
GSM4801977 ,
GSM4801978 ,
GSM4801979 ,
GSM4801980 ,
GSM4801981 ,
GSM4801982 ,
GSM4801983 ,
GSM4801984 ,
GSM4801985 ,
GSM4801986 ,
GSM4801987 ,
GSM4801988 ,
GSM4801989 ,
GSM4801990 ,
GSM4801991 ,
GSM4801992 ,
GSM4830944 ,
GSM4830945 ,
GSM4830946 ,
GSM4830947 ,
GSM4830948 ,
GSM4830949 ,
GSM4830950 ,
GSM4830951 ,
GSM4830952 ,
GSM4830953 ,
GSM4851852 ,
GSM4851853 ,
GSM4851854 ,
GSM4851855 ,
GSM4851856 ,
GSM4851857 ,
GSM4851858 ,
GSM4851859 ,
GSM4851860 ,
GSM4879488 ,
GSM4879489 ,
GSM4879490 ,
GSM4879491 ,
GSM4879492 ,
GSM4879493 ,
GSM4928863 ,
GSM4928864 ,
GSM4928865 ,
GSM4928866 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (65)
GSE68343 Human glioblastoma stem cells (GSCs) differentiation: Undifferentiated cells vs. Differentiated cells
GSE74048 The long noncoding RNA expression profile of human gallbladder carcinoma identified by microarray analysis
GSE76329 Nonkeratinizing Carcinoma Tissues: Tumor vs. Adjacent non-tumor tissues
GSE78811 lncRNA expression profile identified by microarray in infantile hemangioma
GSE80695 Whole genome analysis of iron oxide nanoparticles treated mensenchymal stem cells
GSE85841 Gene expression analysis of lung adenocarcinoma and adjacent non-tumor tissues
GSE86534 Genome-wide long non-coding RNAs and mRNAs analysis of the tissues related to ovarian endometriosis
GSE88811 Microarray expression profiling of dysregulated long non-coding RNAs between RCC tumor tissues and corresponding adjacent tissues
GSE90738 Circular RNAs are super abundant in cervical tumor and plasma detected by high throughput microarray [cervical_cancer_mRNA]
GSE90741 Circular RNAs are super abundant in cervical tumor and plasma detected by high throughput microarray
GSE93779 Microarray profiling of lncRNA expression in MCF-7 and MDA-MB-231 cells
GSE93781 FOXN3 Enlists NEAT1-containing SIN3A Complex to Regulate Mammary Epithelium Differentiation and Promote Breast Cancer Metastasis
GSE93889 Time-course differential lncRNA and mRNA expressions in radioresistant hypopharyngeal cancer cells
GSE93929 Altered expression of long noncoding RNAs in LNCaP castration resistant prostate cancer cell lines
GSE94519 Long noncoding RNAs expression profile in patients with rheumatoid arthritis
GSE97050 A Long Noncoding RNA TTN-AS1 Controls Esophageal Squamous Cell Carcinomas by Functioning as a Competing Endogenous RNA and Scaffolding mRNA Stabilizing Protein HuR [Agilent]
GSE97051 lncRNA-miRNA-mRNA expression profiles in esophageal squamous carcinoma tissues and adjacent normal tissues
GSE97772 Expression profiles of lncRNAs and mRNAs in KGN/shPWRN2 cell lines
GSE99351 Long noncoding RNA expression profiles in sub-lethal heat treated hepatoma carcinoma cells. (SMMC-7721 cells: sub-lethal heat treated vs. untreated)
GSE102594 Differential gene expressions in dose-related radioresistant hypopharyngeal cancer cells
GSE102759 Hepatocellular carcinoma: recurrence after liver transplantation and the primary cancer
GSE107231 lncRNA changes in the livers of NAFLD patients compared with that of healthy control
GSE111565 Expression profiles of mRNA and lncRNA in HCT-8 cells infected with Cryptosporidium parvum IId subtype
GSE113079 LncRNA Expression Profile and Identification of Novel LncRNA Biomarkers for Diagnosing Coronary Artery Disease
GSE115018 Simultaneous control of non-coding RNA on the G2/M phase of the cell cycle in hepatocellular carcinoma [lncRNA and mRNA]
GSE115019 Simultaneous control of non-coding RNA on the G2/M phase of the cell cycle in hepatocellular carcinoma
GSE117005 Comprehensive analysis of the whole coding and noncoding RNA transcriptome expression profiles and construction of the circRNA-lncRNA co-regulated ceRNA network in laryngeal squamous cell carcinoma [lncRNA-mRNA]
GSE117007 Comprehensive analysis of the whole coding and noncoding RNA transcriptome expression profiles and construction of the circRNA-lncRNA co-regulated ceRNA network in laryngeal squamous cell carcinoma
GSE121090 A Qualitative Transcriptional Signature for the Histological Classification of Non-Small Cell Lung Cancer
GSE122091 human ESC-MSCs: IFN-γ-nontreated, IFN-γ-treated for 1 day, IFN-γ-treated for 3 days
GSE122420 Expression data from CSC and Non-CSC of three primary HCC samples
GSE123932 Development of gene expression signatures for liver cirrhosis
GSE129047 Gene expression signatures for GSC2 after treated by clofoctol for 6 hours
GSE130221 Microarray expression profile analysis of lncRNAs in human Pancreatic Ductal Adenocarcinoma
GSE130779 lncRNA and mRNA expression analysis of lung adenocarcinoma and adjacent non-tumor tissues
GSE134025 Ulcerative colitis gene expressions file
GSE134834 Colorectal cancer lncRNA/mRNA expression
GSE137486 Expression data from PC3 cells treated with astragalus polysaccharides
GSE145666 Long Non-coding RNA expression predictive of tumour response in patients treated with preoperative chemoradiotherapy for LARC
GSE146218 lncRNA and mRNA expression data in Heart Tissue associated with Tetralogy of Fallot
GSE146220 Expression data in Heart Tissue associated with Tetralogy of Fallot
GSE146459 Differentially RNA expression of lung adenocarcinoma and paired paracancerous tissue
GSE146460 Differentially RNA expressions of brain metastases from lung adenocarcinoma and paired paracancerous tissue
GSE146461 RNA expression of lung adenocarcinoma and paired paracancerous tissue
GSE147385 LncRNA and mRNA expression profiling reveals the molecular mechanism of hyperthermia sensitizing human gastric cancer cisplatin- resistant cell line SGC-7901/DDP
GSE153829 Aberrantly expressed lncRNAs and mRNAs of osteogenically differentiated mesenchymal stem cells in ossification of the posterior longitudinal ligament
GSE157289 LncRNA expression profile in gastric cancer specimens and adjacent noncancerous tissues
GSE157804 lncRNAs and mRNAs expression data in esophageal squamous cell carcinoma(ESCC) and adjacent normal tissues
GSE157808 Analysis in esophageal squamous cell carcinoma(ESCC) and adjacent normal tissues
GSE158042 Humans PBMCs: Balanced constitution vs. Phlegm-dampness constitution
GSE159490 The HIF-1α antisense long non-coding RNA drives a positive feedback loop of HIF-1α mediated transactivation and glycolysis
GSE159968 lncRNA and mRNA expression data from MCF-7, LCC2 and LCC9 cells
GSE159981 lncRNA, mRNA, miRNA and circRNA expression data from MCF-7, LCC2 and LCC9 cells
GSE160804 Integrated analysis of DNA methylation and gene expression profiles identified S100A9 as a potential biomarker in ulcerative colitis
GSE161968 Downregulation of lncRNA XR_429159.1 could promote brain metastasis in patients with limited-stage small-cell lung cancer
GSE163980 Long non-coding RNA screening for type 2 diabetes
GSE166606 Wilms' tumor lncRNA sequence in the blood
GSE168927 human ovarian cancer cells:parental PTX-sensitive cells (OVCAR-3) vs. PTX-resistant cells (OV3R-PTX)
GSE174197 Analysis of lncrna expression profile in LPS activated THP1 cells
GSE182550 Human melanoma Cells (A2058): Control interference fragment transfected vs. PARP1 interference fragment transfected
GSE184093 Human colorectal tumor tissue: Tumor vs. histologically normal tissue
GSE193047 lncRNA and mRNA expression of HUVECs under H/R and normal conditions
GSE197220 Expression data from TGFβ1(TGFbeta1) treated HCC cells
GSE199148 Human placental tissues:control group vs non-diabetic fetal macrosomia (NDFMS) group
GSE234085 Differential expression of lncRNA in peripheral blood lymphocytes of Xinjiang Kazakh patients with essential hypertension
Data table header descriptions ID ControlType SPOT_ID mRNA_ProbeName ProbeID SEQUENCE probe sequence
PrimaryAccession RefSeqAccession GB_ACC GenBank Accession number
UniGeneID EntrezGeneID GeneSymbol GeneName EnsemblID TIGRID GO Description Gene description
GenomicCoordinates Cytoband lncRNA_ProbeName lncRNA ID Chromosome Strand Start End cdsstart cdsend exoncount exonstart exonend gene DESCRIPTION alias known lncRNA name class database Sense Antisense Intronic Bidirectional Intergenic(10k)
Data table ID ControlType SPOT_ID mRNA_ProbeName ProbeID SEQUENCE PrimaryAccession RefSeqAccession GB_ACC UniGeneID EntrezGeneID GeneSymbol GeneName EnsemblID TIGRID GO Description GenomicCoordinates Cytoband lncRNA_ProbeName lncRNA ID Chromosome Strand Start End cdsstart cdsend exoncount exonstart exonend gene DESCRIPTION alias known lncRNA name class database Sense Antisense Intronic Bidirectional Intergenic(10k) GE_BrightCorner
1
CONTROL
DarkCorner
1
CONTROL
p42318_v4
0
lncRNA p42318_v4
GTGAGTATTACCTAAAATTTTTTCCTGTCTTATGTAGCAAAGAGGGAAGTCACTGAGTCA
p42318_v4
XR_428990.1
chr11
-
103713557
103718705
103713557
103713557
3
103713557,103714409,103718671,
103713714,103714657,103718705,
none
RefSeq
p117
0
lncRNA p117
AAAGACATCAAGCTGGACCCATCGAGGATTTCGGATTCAGCCATCATGGGGCTGCTGCCG
p117
ENST00000442055.1
1
-
26143239
26146263
26146263
26146263
4
26143239,26144052,26144893,26146134,
26143371,26144204,26144915,26146263,
ENSG00000228172.1
gene_id ENSG00000228172.1; transcript_id ENST00000442055.1; gene_type processed_transcript; gene_status NOVEL; gene_name RP1-317E23.3; transcript_type processed_transcript; transcript_status KNOWN; transcript_name RP1-317E23.3-001; level 2; havana_gene OTTHUMG00000007376.1; havana_transcript OTTHUMT00000019317.1;
ENST00000442055.1
Antisense
ENSEMBL
ENST00000374315
ENST00000469815
ENST00000494537
p28737
0
lncRNA p28737
CCCAAATGAGCAGGATTGCTTTTGCTTTCAAAAGAGTGATACCTGGAGCACAGGTATTCT
p28737
LIT1891
None
None
None
None
None
None
None
None
None
LIT1891
Accession=BCMS;Description=Homo sapiens mRNA for B-cell neoplasia associated transcript, (BCMS gene), splice variant AA, non coding transcript
CombinedLit_419_319
Intergenic
RNAdb
p17314
0
lncRNA p17314
TTAGGGTCTGACAGTTGATTATCACAGACAGACTTTTTCATGATAGCAGATCATCTCTGT
p17314
ENST00000419158.1
Y
-
24247838
24293631
24293631
24293631
13
24247838,24249031,24249693,24250010,24251896,24253698,24267430,24268214,24275511,24275905,24286096,24292786,24293430,
24248516,24249149,24249890,24250096,24252232,24253788,24267784,24268333,24275597,24276128,24286237,24293096,24293631,
ENSG00000236951.1
gene_id ENSG00000236951.1; transcript_id ENST00000419158.1; gene_type lincRNA; gene_status NOVEL; gene_name AC007359.6; transcript_type lincRNA; transcript_status KNOWN; transcript_name AC007359.6-001; level 2; tag basic; havana_gene OTTHUMG00000043574.1; havana_transcript OTTHUMT00000101912.1;
ENST00000419158.1
Intergenic
ENSEMBL
ENST00000341740, ENST00000472391
A_33_P3310047
0
A_33_P3310047
A_33_P3310047
AAATGAACAATCCGAAAATGTTATTAAGAAAACAGTTCCGGCCGGGCATGGTGGCTCACG
NM_020717
NM_020717
NM_020717 Hs.420541
57477
SHROOM4
shroom family member 4
ENST00000289292
THC2508182
GO:0000902(cell morphogenesis)|GO:0001725(stress fiber)|GO:0005634(nucleus)|GO:0005730(nucleolus)|GO:0005737(cytoplasm)|GO:0007015(actin filament organization)|GO:0007275(multicellular organismal development)|GO:0007420(brain development)|GO:0009898(internal side of plasma membrane)|GO:0009925(basal plasma membrane)|GO:0015629(actin cytoskeleton)|GO:0016324(apical plasma membrane)|GO:0016460(myosin II complex)|GO:0030036(actin cytoskeleton organization)|GO:0030864(cortical actin cytoskeleton)|GO:0031941(filamentous actin)|GO:0050890(cognition)|GO:0051015(actin filament binding)
Homo sapiens shroom family member 4 (SHROOM4), transcript variant 1, mRNA [NM_020717]
chrX:50335055-50334996
hs|Xp11.22
p22477
0
lncRNA p22477
GGGATCACAGAATGCTTGCTCAATCAACTTTGCTCATCCAAAATCACAAAAATCGCCTCA
p22477
TCONS_00008774
4
+
31544376
31560351
31560351
31560351
3
31544376,31559120,31560273,
31544442,31559216,31560351,
XLOC_003495
Gene_id=XLOC_003495;Gene_name=linc-DTHD1-11;Transcript_id=TCONS_00008774;Transcript_name=linc-DTHD1-11;
XLOC_003495
Intergenic
HumanLincRNACatalog
p8225
0
lncRNA p8225
GTGGATGAGTTGAGAACACCAGGCAGAGGCATGTACCTGGTCTTTGATGGTTCAGTGGAC
p8225
ENST00000589910.1
19
-
19868951
19887189
19887189
19887189
4
19868951,19872065,19873346,19887135,
19869355,19872230,19873455,19887189,
ENSG00000266904.1
gene_id ENSG00000266904.1; transcript_id ENST00000589910.1; gene_type lincRNA; gene_status NOVEL; gene_name LINC00663; transcript_type lincRNA; transcript_status KNOWN; transcript_name LINC00663-004; level 2; havana_gene OTTHUMG00000182363.1; havana_transcript OTTHUMT00000460779.1;
ENST00000589910.1
LINC00663
Intergenic
ENSEMBL
p7095
0
lncRNA p7095
GCCTAAGGTAGGCCAGAGTTAATTTTTGTGTTATCTATACACGTTATTGAAGCGAATTAT
p7095
ENST00000582866.1
17
-
79836300
79838982
79838982
79838982
1
79836300,
79838982,
ENSG00000263731.1
gene_id ENSG00000263731.1; transcript_id ENST00000582866.1; gene_type non_coding; gene_status NOVEL; gene_name RP11-498C9.15; transcript_type non_coding; transcript_status KNOWN; transcript_name RP11-498C9.15-001; level 2; tag basic; havana_gene OTTHUMG00000178529.1; havana_transcript OTTHUMT00000442382.1;
ENST00000582866.1
Intergenic
ENSEMBL
ENST00000505490, ENST00000400721
p19421
0
lncRNA p19421
TACCGCAAGCCTGTTTCAAGTAATTCCAATATCTGGCTCTTAGAAATTGAACTGATCTTT
p19421
TCONS_00022447
14
+
27284944
27289851
27289851
27289851
3
27284944,27286125,27289363,
27285048,27286252,27289851,
XLOC_010778
Gene_id=XLOC_010778;Gene_name=linc-FOXG1-3;Transcript_id=TCONS_00022447;Transcript_name=linc-FOXG1-3;
XLOC_010778
Intergenic
HumanLincRNACatalog
p1301
0
lncRNA p1301
GAGAAGAAAGAACACTCAGATGTGCCCTGGAGACTTTCCTTTTATTTTTAAACAGTTTTT
p1301
ENST00000444887.1
1
+
187412737
187439371
187439371
187439371
2
187412737,187439202,
187412858,187439371,
ENSG00000231599.1
gene_id ENSG00000231599.1; transcript_id ENST00000444887.1; gene_type lincRNA; gene_status NOVEL; gene_name RP11-445P19.1; transcript_type lincRNA; transcript_status KNOWN; transcript_name RP11-445P19.1-001; level 2; havana_gene OTTHUMG00000035479.1; havana_transcript OTTHUMT00000086169.1;
ENCODE_2806_290;TCONS_00000351;XLOC_000498;TCONS_00000352;XLOC_000498
Intergenic
ENSEMBL
A_24_P58881
0
THC2570186
A_24_P58881
A_24_P58881
CAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTTGTGATGTTTCAAGGAAGAATTCT
THC2570186
THC2570186
Q6GMC1_XENLA (Q6GMC1) MGC81889 protein, partial (69%) [THC2570186]
chr2:048110777-048110837
hs|2p16.3
A_21_P0011890
0
A_21_P0011890
A_21_P0011890
GCGGCCAGGTCACAGTCGGCACCAGAAGTTTGGCAGATCTCAGTGAGGCGTTAGTTTGCA
ENST00000415434
BG772076 Hs.130180
XLOC_l2_007834
ENST00000415434
THC2616721
chr2:242824713-242824772
hs|2q37.3
A_33_P3234550
0
A_33_P3234550
A_33_P3234550
CCCTAGTATCTGGCACATAGTATACCCCCAGGAAGTATTTATTGTGAAAATCAATAAATT
XM_003119910
XM_003119910
XM_003119910 100508383
LOC100508383
uncharacterized LOC100508383
ENST00000419960
THC2684442
PREDICTED: Homo sapiens hypothetical protein LOC100508383 (LOC100508383), mRNA [XM_003119910]
chr3:184157366-184157425
hs|3q27.1
A_33_P3397840
0
A_33_P3397840
A_33_P3397840
AGCAGTCGGGCAGAGCTCTGATGACATCAAAGGCAGAAATTCTCAGGTAACACAAGCCTC
ENST00000242140
BC156551 Hs.709280
644150
WIPF3
WAS/WASL interacting protein family, member 3
ENST00000242140
THC2513833
GO:0003779(actin binding)|GO:0005730(nucleolus)|GO:0005737(cytoplasm)|GO:0007275(multicellular organismal development)|GO:0007283(spermatogenesis)|GO:0017124(SH3 domain binding)|GO:0030154(cell differentiation)
WAS/WASL interacting protein family, member 3 [Source:HGNC Symbol;Acc:22004] [ENST00000242140]
chr7:29943933-29943992
hs|7p14.3
p35974_v4
0
lncRNA p35974_v4
AGATCAGCCAGGTCACAGTGAGGGTCAAAGCAGGAGGCCACTGGAGGCTCCAAGGGCTCT
p35974_v4
TCONS_00028519
20
+
23160768
23170935
23170935
23170935
5
23160768,23161047,23167036,23167849,23170419,
23160884,23161165,23167187,23168277,23170935,
XLOC_013489
Gene_id=XLOC_013489;Gene_name=linc-NXT1-1;Transcript_id=TCONS_00028519;Transcript_name=linc-NXT1-1;
XLOC_013489
Intergenic
HumanLincRNACatalog
A_23_P217621
0
A_23_P217621
A_23_P217621
AATGTAGTAGACTTAAAGACCCCACTCGACCATGAGACTTTCTCTTTGTCAATTTGGGAA
NM_024885
NM_024885
NM_024885 Hs.223806
54457
TAF7L
TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa
ENST00000356784
THC2476080
GO:0003674(molecular_function)|GO:0005488(binding)|GO:0005634(nucleus)|GO:0005669(transcription factor TFIID complex)|GO:0005737(cytoplasm)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0006367(transcription initiation from RNA polymerase II promoter)|GO:0007275(multicellular organismal development)|GO:0007283(spermatogenesis)|GO:0008150(biological_process)|GO:0030154(cell differentiation)
Homo sapiens TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa (TAF7L), transcript variant 1, mRNA [NM_024885]
chrX:100523998-100523939
hs|Xq22.1
A_21_P0008663
0
THC2616036
A_21_P0008663
A_21_P0008663
CCACACTGACACTTGCTGTGCCATTGATTTGACTTTTCTCCTATCTTAACAATAACAAAT
THC2616036
XLOC_011331
THC2616036
BC011509 Cox15 protein {Mus musculus} (exp=-1; wgp=0; cg=0), partial (5%) [THC2616036]
chr15:082393755-082393814
hs|15q25.2
p34840_v4
0
lncRNA p34840_v4
AGTGAGGACACAGCCAAACCGTATCAGCATGCCCAAATTGGATCTCAGCGCCTGGGAGCT
p34840_v4
ENST00000585625.1
2
+
179385909
179396305
179396305
179396305
4
179385909,179386519,179388178,179396040,
179386028,179386895,179388363,179396305,
ENSG00000237298.2
gene_id ENSG00000237298.2; transcript_id ENST00000585625.1; gene_type antisense; gene_status NOVEL; gene_name TTN-AS1; transcript_type antisense; transcript_status KNOWN; transcript_name TTN-AS1-038; level 2; tag RNA_Seq_supported_only; tag basic; havana_gene OTTHUMG00000133536.5; havana_transcript OTTHUMT00000458894.1;
ENST00000585625.1
TTN-AS1
Antisense
ENSEMBL
75217 41902 Kbytes .Supplementary data files not provided
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