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Platform GPL12621 Query DataSets for GPL12621
Status Public on Feb 02, 2011
Title Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Arabidopsis thaliana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arabidopsis 4 Oligo Microarray (V4)

Arrays of this design have barcodes that begin with 16021169 or 2521169.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Names.

A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL9020.
 
Submission date Feb 02, 2011
Last update date Apr 22, 2015
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (1897) GSM546985, GSM546986, GSM554343, GSM665335, GSM705435, GSM705436 
Series (141)
GSE22000 The Arabidopsis Aminopeptidase LAP2 Regulates Plant Growth, Leaf Longivity and Stress Response
GSE22277 Arabidopsis thaliana ecotype Columbia [Col-0]: incubated with E. coli vs. Control
GSE27006 Arabidopsis thaliana ecotype Columbia [Col-0]): incubated with yeast (saccharomyces cerevisiae) vs. Control
Relations
Alternative to GPL9020

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE
(+)E1A_r60_1 (+)E1A_r60_1 pos
(+)E1A_r60_3 (+)E1A_r60_3 pos
(+)E1A_r60_a104 (+)E1A_r60_a104 pos
(+)E1A_r60_a107 (+)E1A_r60_a107 pos
(+)E1A_r60_a135 (+)E1A_r60_a135 pos
(+)E1A_r60_a20 (+)E1A_r60_a20 pos
(+)E1A_r60_a22 (+)E1A_r60_a22 pos
(+)E1A_r60_a97 (+)E1A_r60_a97 pos
(+)E1A_r60_n11 (+)E1A_r60_n11 pos
(+)E1A_r60_n9 (+)E1A_r60_n9 pos
(+)eQC-39 (+)eQC-39 pos
(+)eQC-40 (+)eQC-40 pos
(+)eQC-41 (+)eQC-41 pos
(+)eQC-42 (+)eQC-42 pos
(-)3xSLv1 (-)3xSLv1 neg
A_84_P10000 A_84_P10000 FALSE tc|TC375586 chr4:2041126-2040951 CTACATTGGTACAAAGACTTATTCCCGGAGGAGATTCCACCCGGACTACCACCTATTCAC
A_84_P10001 A_84_P10001 FALSE NM_102184 NM_102184 838944 AT1G23350 plant invertase/pectin methylesterase inhibitor domain-containing protein At.41554 ref|NM_102184|gb|AK175880|ta|TA46278_3702|ta|CD533988 chr1:8293784-8293725 Arabidopsis thaliana plant invertase/pectin methylesterase inhibitor domain-containing protein (AT1G23350) mRNA, complete cds [NM_102184] GO:0004857(enzyme inhibitor activity)|GO:0008150(biological_process)|GO:0030599(pectinesterase activity)|GO:0046910(pectinesterase inhibitor activity) AGGAGGTCAACGTCATTTATAAATCCGCCGGGGTTTTGTACCGTATGGCTGATAATTGCT
A_84_P10002 A_84_P10002 FALSE NM_116719 NM_116719 825818 MSRB4 peptide methionine sulfoxide reductase B4 At.33960 ref|NM_116719|tc|NP13350399|ta|N97075|tc|TC392188 chr4:2442153-2442212 Arabidopsis thaliana peptide methionine sulfoxide reductase B4 (MSRB4) mRNA, complete cds [NM_116719] GO:0005829(cytosol)|GO:0008113(peptide-methionine-(S)-S-oxide reductase activity)|GO:0055114(oxidation-reduction process) GGGAACAGAAGAATATGACAAGTTCTTTGAGGAAGGAATCTTCAGCTGCATCGGATGCAA
A_84_P10003 A_84_P10003 FALSE NM_116748 NM_116748 825853 AT4G05090 putative PAP-specific phosphatase At.33920 ref|NM_116748|gb|AK175301|ta|TA43475_3702|ta|CNS0A2VL chr4:2611532-2611591 Arabidopsis thaliana putative PAP-specific phosphatase (AT4G05090) mRNA, complete cds [NM_116748] GO:0004437(inositol or phosphatidylinositol phosphatase activity)|GO:0006790(sulfur compound metabolic process)|GO:0008441(3'(2'),5'-bisphosphate nucleotidase activity)|GO:0009507(chloroplast) AGGCTCATTTTTCCGGCGGGCGGTGTTGTAGTAAGCAACGGAAGTTTACATAATCAGATT
A_84_P10004 A_84_P10004 FALSE NM_116765 NM_116765 825874 AT4G05260 ubiquitin family protein At.54160 ref|NM_116765|tc|TC379214 chr4:2694314-2694373 Arabidopsis thaliana ubiquitin family protein (AT4G05260) mRNA, complete cds [NM_116765] GO:0003674(molecular_function)|GO:0005575(cellular_component) TAAGGGATCATTTAGATCGGCCTCAAGATGGTGATTATTTCTTCGTACACAAAGGGAGAG

Total number of rows: 43663

Table truncated, full table size 18894 Kbytes.




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